Strain identifier
BacDive ID: 134318
Type strain: 
Species: Tenacibaculum aiptasiae
Strain Designation: a4
NCBI tax ID(s): 426481 (species)
version 8.1 (current version)
General
@ref: 32401
BacDive-ID: 134318
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Tenacibaculum aiptasiae a4 is an aerobe, Gram-negative, motile bacterium that was isolated from Sea anemone.
NCBI tax id
- NCBI tax id: 426481
- Matching level: species
doi: 10.13145/bacdive134318.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Tenacibaculum
- species: Tenacibaculum aiptasiae
- full scientific name: Tenacibaculum aiptasiae Wang et al. 2008
@ref: 32401
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Tenacibaculum
species: Tenacibaculum aiptasiae
strain designation: a4
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
|---|---|---|---|---|---|---|---|
| 32401 | negative | 4.5 µm | 0.5 µm | rod-shaped | yes | gliding | |
| 69480 | negative | 99.987 |
pigmentation
- @ref: 32401
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32401 | positive | growth | 08-40 | |
| 32401 | positive | optimum | 32.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32401 | positive | growth | 07-09 | alkaliphile |
| 32401 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 32401
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 32401 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.982 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32401 | NaCl | positive | growth | 01-10 % |
| 32401 | NaCl | positive | optimum | 3.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32401 | 35391 | aspartate | + | carbon source |
| 32401 | 29987 | glutamate | + | carbon source |
| 32401 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32401 | acid phosphatase | + | 3.1.3.2 |
| 32401 | alkaline phosphatase | + | 3.1.3.1 |
| 32401 | catalase | + | 1.11.1.6 |
| 32401 | gelatinase | + | |
| 32401 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 32401
- sample type: Sea anemone
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
taxonmaps
- @ref: 69479
- File name: preview.99_79536.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_2278;97_2761;98_5642;99_79536&stattab=map
- Last taxonomy: Tenacibaculum aiptasiae
- 16S sequence: EF416572
- Sequence Identity:
- Total samples: 92
- soil counts: 1
- aquatic counts: 80
- animal counts: 11
Sequence information
16S sequences
- @ref: 32401
- description: Tenacibaculum aiptasiae strain a4 16S ribosomal RNA gene, partial sequence
- accession: EF416572
- length: 1434
- database: nuccore
- NCBI tax ID: 426481
Genome sequences
- @ref: 66792
- description: Tenacibaculum aiptasiae a4
- accession: GCA_008806755
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 426481
GC content
- @ref: 32401
- GC-content: 35
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 94.335 | yes |
| gram-positive | no | 98.391 | yes |
| anaerobic | no | 99.531 | yes |
| aerobic | yes | 86.782 | yes |
| halophile | no | 81.554 | no |
| spore-forming | no | 93.834 | yes |
| thermophile | no | 97.67 | yes |
| glucose-util | yes | 82.324 | no |
| motile | no | 86.251 | no |
| glucose-ferment | no | 91.465 | no |
External links
@ref: 32401
culture collection no.: BCRC 17655, LMG 24004
straininfo link
- @ref: 91893
- straininfo: 294562
literature
- topic: Phylogeny
- Pubmed-ID: 18398166
- title: Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella.
- authors: Wang JT, Chou YJ, Chou JH, Chen CA, Chen WM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65437-0
- year: 2008
- mesh: Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/chemistry/classification/*genetics/*isolation & purification, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sea Anemones/*microbiology, Species Specificity, Terminology as Topic
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32401 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28625 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||
| 91893 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID294562.1 |