Strain identifier

BacDive ID: 134311

Type strain: Yes

Species: Marinobacter pelagius

Strain Designation: HS225

Strain history: X.-W. Xu HS225.

NCBI tax ID(s): 379482 (species)

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General

@ref: 32370

BacDive-ID: 134311

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinobacter pelagius HS225 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 379482
  • Matching level: species

strain history

  • @ref: 67770
  • history: X.-W. Xu HS225.

doi: 10.13145/bacdive134311.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter pelagius
  • full scientific name: Marinobacter pelagius Xu et al. 2008

@ref: 32370

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter pelagius

strain designation: HS225

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32370negative3 µm0.6 µmrod-shapedyes
69480negative99.997

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32370positivegrowth04-48
32370positiveoptimum27.5mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
32370positivegrowth06-09alkaliphile
32370positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32370
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

halophily

@refsaltgrowthtested relationconcentration
32370NaClpositivegrowth0.5-15 %
32370NaClpositiveoptimum5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3237030089acetate+carbon source
3237016449alanine+carbon source
3237029987glutamate+carbon source
3237024996lactate+carbon source
3237025115malate+carbon source
3237017272propionate+carbon source
3237015361pyruvate+carbon source
3237030031succinate+carbon source
3237017632nitrate+reduction

metabolite production

  • @ref: 32370
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
32370catalase+1.11.1.6
32370cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
32370seawater
67770Seawater samples collected from the Zhoushan ArchipelagoZhejiang ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_8906.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_2189;98_2686;99_8906&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: DQ458821
  • Sequence Identity:
  • Total samples: 56
  • soil counts: 5
  • aquatic counts: 49
  • animal counts: 2

Sequence information

16S sequences

  • @ref: 32370
  • description: Marinobacter pelagius strain HS225 16S ribosomal RNA gene, partial sequence
  • accession: DQ458821
  • length: 1436
  • database: nuccore
  • NCBI tax ID: 379482

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter pelagius strain CGMCC 1.6775379482.7wgspatric379482
66792Marinobacter pelagius CGMCC 1.67752619618995draftimg379482
67770Marinobacter pelagius CGMCC 1.6775GCA_900114925contigncbi379482

GC content

@refGC-contentmethod
3237059
6777059thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.782yes
anaerobicno97.025yes
halophileyes90.166no
spore-formingno96.339no
glucose-utilno63.065no
aerobicyes82.673yes
motileno58.972yes
flagellatedno65.779no
thermophileno99.485yes
glucose-fermentno90.338no

External links

@ref: 32370

culture collection no.: CGMCC 1.6775, JCM 14804

straininfo link

  • @ref: 91887
  • straininfo: 343450

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18319470Marinobacter pelagius sp. nov., a moderately halophilic bacterium.Xu XW, Wu YH, Wang CS, Yang JY, Oren A, Wu MInt J Syst Evol Microbiol10.1099/ijs.0.65390-02008Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Marinobacter/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Species SpecificityGenetics
Phylogeny19060077Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea.Huo YY, Wang CS, Yang JY, Wu M, Xu XWInt J Syst Evol Microbiol10.1099/ijs.0.2008/000786-02008China, Geologic Sediments/*microbiology, Marinobacter/*classification/genetics/*physiology, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Phylogeny31778353Marinobacter fonticola sp. nov., isolated from deep sea cold seep sediment.Sun QL, Sun YL, Sun YY, Luan ZD, Lian CInt J Syst Evol Microbiol10.1099/ijsem.0.0038952020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Marinobacter/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32370Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172859828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91887Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID343450.1