Strain identifier

BacDive ID: 134301

Type strain: Yes

Species: Sinomonas albida

Strain Designation: LC13

Strain history: CCTCC AB 206018 <-- L. Ding and A. Yokota; IAM, Japan; LC13.

NCBI tax ID(s): 369942 (species)

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@ref: 32315

BacDive-ID: 134301

keywords: Gram-positive, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Sinomonas albida LC13 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from volcanic rock.

NCBI tax id

  • NCBI tax id: 369942
  • Matching level: species

strain history: CCTCC AB 206018 <-- L. Ding and A. Yokota; IAM, Japan; LC13.

doi: 10.13145/bacdive134301.20220920.7

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Sinomonas
  • species: Sinomonas albida
  • full scientific name: Sinomonas albida (Ding et al. 2009) Zhou et al. 2012
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter albidus

@ref: 32315

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Sinomonas

species: Sinomonas albida

strain designation: LC13

type strain: yes


cell morphology

  • @ref: 32315
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no


  • @ref: 32315
  • production: yes

Culture and growth conditions

culture temp


culture pH


Physiology and metabolism

oxygen tolerance

  • @ref: 32315
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32315
  • spore formation: no


  • @ref: 32315
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 03-07 %


  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-10(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3231517234glucose+carbon source
3231529864mannitol+carbon source
3231533942ribose+carbon source
3231517992sucrose+carbon source
3231518222xylose+carbon source


32315alkaline phosphatase+

Isolation, sampling and environmental information


@refsample typecountryorigin.countrycontinent
32315volcanic rock
67770Filtration substrate made from volcanic rock from NiigataJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Volcanic

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
32315Arthrobacter albidus gene for 16S rRNA, partial sequenceAB2485331484nuccore369942
67770Sinomonas albida JCM 30149 gene for 16S ribosomal RNA, partial sequenceLC4387591458ena369942

Genome sequences

  • @ref: 66792
  • description: Sinomonas albida LC13
  • accession: GCA_004919045
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 369942

GC content

6777070.8high performance liquid chromatography (HPLC)

External links

@ref: 32315

culture collection no.: IAM 15386, CCTCC AB 206018, JCM 30149, DSM 107966, JCM 21830

straininfo link

  • @ref: 20218
  • passport:


  • topic: Phylogeny
  • Pubmed-ID: 19329620
  • title: Four novel Arthrobacter species isolated from filtration substrate.
  • authors: Ding L, Hirose T, Yokota A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65301-0
  • year: 2009
  • mesh: Amino Acids/analysis, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysis
  • topic2: Genetics


20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
32315Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604128552
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCM