Strain identifier
BacDive ID: 134286
Type strain: 
Species: Rubritalea spongiae
Strain Designation: YM21-132
Strain history: <- JW Yoon, Tokyo Univ., Japan
NCBI tax ID(s): 430797 (species)
version 8.1 (current version)
General
@ref: 32276
BacDive-ID: 134286
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Rubritalea spongiae YM21-132 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine animals.
NCBI tax id
- NCBI tax id: 430797
- Matching level: species
strain history
- @ref: 67771
- history: <- JW Yoon, Tokyo Univ., Japan
doi: 10.13145/bacdive134286.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/verrucomicrobiota
- domain: Bacteria
- phylum: Verrucomicrobiota
- class: Verrucomicrobiia
- order: Verrucomicrobiales
- family: Rubritaleaceae
- genus: Rubritalea
- species: Rubritalea spongiae
- full scientific name: Rubritalea spongiae Yoon et al. 2007
@ref: 32276
domain: Bacteria
phylum: Verrucomicrobia
class: Verrucomicrobiae
order: Verrucomicrobiales
family: Rubritaleaceae
genus: Rubritalea
species: Rubritalea spongiae
strain designation: YM21-132
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 32276 | negative | 1 µm | 0.75 µm | rod-shaped | no |
| 67771 | rod-shaped | no | |||
| 67771 | negative |
pigmentation
- @ref: 32276
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32276 | positive | growth | 04-37 | |
| 32276 | positive | optimum | 33.5 | mesophilic |
| 67771 | positive | growth | 30-37 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 32276 | positive | growth | 6.5-8 |
| 32276 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 32276 | aerobe |
| 67771 | aerobe |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32276 | NaCl | positive | growth | 01-07 % |
| 32276 | NaCl | positive | optimum | 4 % |
observation
- @ref: 67771
- observation: quinones: MK-8, MK-9
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32276 | 30089 | acetate | + | carbon source |
| 32276 | 28757 | fructose | + | carbon source |
| 32276 | 33984 | fucose | + | carbon source |
| 32276 | 17234 | glucose | + | carbon source |
| 32276 | 17596 | inosine | + | carbon source |
| 32276 | 29864 | mannitol | + | carbon source |
| 32276 | 28053 | melibiose | + | carbon source |
| 32276 | 30911 | sorbitol | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32276 | acid phosphatase | + | 3.1.3.2 |
| 32276 | alkaline phosphatase | + | 3.1.3.1 |
| 32276 | catalase | + | 1.11.1.6 |
| 32276 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 32276 | marine animals | ||||
| 67771 | From unidentified marine sponge | shore of Ohshima, Natsudomari Peninsula, Aomori | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host |
Sequence information
16S sequences
- @ref: 32276
- description: Rubritalea spongiae gene for 16S rRNA, partial sequence
- accession: AB297805
- length: 1471
- database: nuccore
- NCBI tax ID: 430797
GC content
| @ref | GC-content |
|---|---|
| 32276 | 48 |
| 67771 | 48.0 |
External links
@ref: 32276
culture collection no.: MBIC 08281, KCTC 12906, NBRC 104204
literature
- topic: Phylogeny
- Pubmed-ID: 17911307
- title: Rubritalea spongiae sp. nov. and Rubritalea tangerina sp. nov., two carotenoid- and squalene-producing marine bacteria of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia', isolated from marine animals.
- authors: Yoon J, Matsuo Y, Matsuda S, Adachi K, Kasai H, Yokota A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65243-0
- year: 2007
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genes, rRNA, Gram-Negative Bacteria/chemistry/*classification/genetics/*isolation & purification, Molecular Sequence Data, Muramic Acids/analysis, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32276 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28516 | 28776041 |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |