Strain identifier

BacDive ID: 134269

Type strain: Yes

Species: Methylophaga aminisulfidivorans

Strain Designation: MP

Strain history: S. W. Kim MP.

NCBI tax ID(s): 230105 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 32215

BacDive-ID: 134269

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Methylophaga aminisulfidivorans MP is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 230105
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. W. Kim MP.

doi: 10.13145/bacdive134269.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Piscirickettsiaceae
  • genus: Methylophaga
  • species: Methylophaga aminisulfidivorans
  • full scientific name: Methylophaga aminisulfidivorans Kim et al. 2007

@ref: 32215

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Piscirickettsiaceae

genus: Methylophaga

species: Methylophaga aminisulfidivorans

strain designation: MP

type strain: yes

Morphology

cell morphology

  • @ref: 32215
  • gram stain: negative
  • cell length: 1 µm
  • cell width: 0.3 µm
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32215positivegrowth20-37
32215positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
32215positivegrowth6.0-8.0
32215positiveoptimum6.9

Physiology and metabolism

oxygen tolerance

  • @ref: 32215
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32215
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32215NaClpositivegrowth1.5-9 %
32215NaClpositiveoptimum3 %

observation

@refobservation
32215aggregates in clumps
67770quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3221528757fructose+carbon source
3221517632nitrate+reduction

enzymes

@refvalueactivityec
32215catalase+1.11.1.6
32215cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
32215seawater
67770Seawater sample collected from MokpoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 32215
  • description: Methylophaga aminisulfidivorans MP 16S ribosomal RNA gene, partial sequence
  • accession: DQ463161
  • length: 1498
  • database: nuccore
  • NCBI tax ID: 1026882

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methylophaga aminisulfidivorans MP1026882.3wgspatric1026882
66792Methylophaga aminisulfidivorans MP, KCTC 12909651324072draftimg1026882
67770Methylophaga aminisulfidivorans MPGCA_000214595contigncbi1026882

GC content

@refGC-contentmethod
3221544.9
6777044.9thermal denaturation, midpoint method (Tm)
6777043.5genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes76.594yes
flagellatedyes60.392yes
gram-positiveno99.091no
anaerobicno97.594yes
aerobicyes85.105yes
halophileno67.202no
spore-formingno97.279yes
thermophileno98.995yes
glucose-utilyes64.692no
glucose-fermentno85.999no

External links

@ref: 32215

culture collection no.: KCTC 129095, VKM B-24415, JCM 14647, KCTC 12909, VKM B-2441

straininfo link

  • @ref: 91855
  • straininfo: 309542

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17766878Methylophaga aminisulfidivorans sp. nov., a restricted facultatively methylotrophic marine bacterium.Kim HG, Doronina NV, Trotsenko YA, Kim SWInt J Syst Evol Microbiol10.1099/ijs.0.65139-02007Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbon/*metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Dimethyl Sulfoxide/metabolism, Fatty Acids/analysis, Fructose/metabolism, Genes, rRNA, Hydrogen-Ion Concentration, Korea, Methanol/metabolism, Methylamines/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Piscirickettsiaceae/*classification/genetics/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Sulfides/metabolism, Temperature, Ubiquinone/analysis, Vitamin B 12/metabolismMetabolism
Genetics21685284Draft genome sequence of Methylophaga aminisulfidivorans MP T.Han GH, Kim W, Chun J, Kim SWJ Bacteriol10.1128/JB.05403-112011Dimethyl Sulfoxide/metabolism, *Genome, Bacterial, Methanol/metabolism, Methylamines/metabolism, Molecular Sequence Data, Piscirickettsiaceae/classification/*genetics/metabolism, Sulfides/metabolismMetabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32215Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172845728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
91855Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID309542.1