Strain identifier

BacDive ID: 134239

Type strain: Yes

Species: Mesorhizobium ciceri

NCBI tax ID(s): 39645 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 32056

BacDive-ID: 134239

keywords: Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Mesorhizobium ciceri LMG 23838 is a mesophilic, Gram-negative, motile bacterium of the family Phyllobacteriaceae.

NCBI tax id

  • NCBI tax id: 39645
  • Matching level: species

doi: 10.13145/bacdive134239.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium ciceri
  • full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997

  • synonyms

    • @ref: 20215
    • synonym: Rhizobium ciceri

@ref: 32056

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium ciceri

type strain: yes

Morphology

cell morphology

  • @ref: 32056
  • gram stain: negative
  • cell length: 1 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32056
  • production: no

Culture and growth conditions

culture medium

  • @ref: 41055
  • name: MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)

culture temp

@refgrowthtypetemperaturerange
32056positiveoptimum28mesophilic
41055positivegrowth30mesophilic

culture pH

@refabilitytypepH
32056positivegrowth5.5-8
32056positiveoptimum6.75

Physiology and metabolism

halophily

  • @ref: 32056
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 1.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3205615963ribitol+carbon source
3205622599arabinose+carbon source
3205618403L-arabitol+carbon source
3205617057cellobiose+carbon source
3205628757fructose+carbon source
3205633984fucose+carbon source
3205628260galactose+carbon source
3205617234glucose+carbon source
3205617754glycerol+carbon source
3205629864mannitol+carbon source
3205637684mannose+carbon source
3205628053melibiose+carbon source
3205626546rhamnose+carbon source
3205633942ribose+carbon source
3205630911sorbitol+carbon source
3205618222xylose+carbon source
320564853esculin+hydrolysis

Sequence information

GC content

  • @ref: 32056
  • GC-content: 62.7

External links

@ref: 32056

culture collection no.: LMG 23838, HAMBI 2942, WSM 1271

straininfo link

  • @ref: 91832
  • straininfo: 361572

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17473255Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L.Nandasena KG, O'Hara GW, Tiwari RP, Willlems A, Howieson JGInt J Syst Evol Microbiol10.1099/ijs.0.64891-02007Acyltransferases/genetics, Alphaproteobacteria/*classification/genetics/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Drug Resistance, Bacterial, Fabaceae/*microbiology/physiology, Fatty Acids/analysis, Genes, rRNA, Genomic Islands/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Phylogeny, Plasmids/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Symbiosis/geneticsGenetics
Metabolism17803775In situ lateral transfer of symbiosis islands results in rapid evolution of diverse competitive strains of mesorhizobia suboptimal in symbiotic nitrogen fixation on the pasture legume Biserrula pelecinus L.Nandasena KG, O'Hara GW, Tiwari RP, Sezmis E, Howieson JGEnviron Microbiol10.1111/j.1462-2920.2007.01368.x2007Alphaproteobacteria/*genetics/*metabolism, Base Sequence, Biological Evolution, Fabaceae/metabolism/*microbiology, *Gene Transfer, Horizontal, Genomic Islands/*genetics, Molecular Sequence Data, Nitrogen Fixation/*genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/growth & development/metabolism/microbiology, Soil MicrobiologyPhylogeny
Genetics24976886Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.).Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Chertkov O, Goodwin L, Bruce D, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Copeland A, Liolios K, Pati A, Mavromatis K, Markowitz V, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Howieson JStand Genomic Sci10.4056/sigs.45382642013
Genetics24976896Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)).Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Gu W, Goodwin L, Detter C, Tapia R, Han C, Copeland A, Liolios K, Chen A, Markowitz V, Pati A, Mavromatis K, Woyke T, Kyrpides N, Ivanova N, Howieson JStand Genomic Sci10.4056/sigs.45682822013
Genetics25197432Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271(T)).Nandasena K, Yates R, Tiwari R, O'Hara G, Howieson J, Ninawi M, Chertkov O, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Liolios K, Pati A, Copeland A, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Reeve WStand Genomic Sci10.4056/sigs.44582832013
Genetics27733511Assembly and transfer of tripartite integrative and conjugative genetic elements.Haskett TL, Terpolilli JJ, Bekuma A, O'Hara GW, Sullivan JT, Wang P, Ronson CW, Ramsay JPProc Natl Acad Sci U S A10.1073/pnas.16133581132016Conjugation, Genetic/genetics, DNA Transposable Elements/*genetics, Fabaceae/*genetics/growth & development, Gene Transfer, Horizontal/*genetics, Genome, Bacterial, Genomic Islands/genetics, Integrases/genetics, Mesorhizobium/genetics/growth & development, Plasmids, *Recombination, Genetic, Symbiosis/genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32056Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172830528776041
41055Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16115
91832Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID361572.1