Strain identifier

BacDive ID: 134237

Type strain: Yes

Species: Methylorubrum salsuginis

Strain Designation: MR

NCBI tax ID(s): 414703 (species)

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General

@ref: 32049

BacDive-ID: 134237

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Methylorubrum salsuginis MR is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 414703
  • Matching level: species

doi: 10.13145/bacdive134237.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Methylobacteriaceae
  • genus: Methylorubrum
  • species: Methylorubrum salsuginis
  • full scientific name: Methylorubrum salsuginis (Wang et al. 2007) Green and Ardley 2018

  • synonyms

    • @ref: 20215
    • synonym: Methylobacterium salsuginis

@ref: 32049

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Methylobacteriaceae

genus: Methylorubrum

species: Methylorubrum salsuginis

strain designation: MR

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32049negative4.0-8.0 µm1.0-1.5 µmrod-shapedyes
69480negative99.999

pigmentation

  • @ref: 32049
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32049positivegrowth04-40
32049positiveoptimum30mesophilic

culture pH

@refabilitytypepH
32049positivegrowth5.0-8.0
32049positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32049
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.998

halophily

  • @ref: 32049
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <1.5 %

observation

  • @ref: 32049
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3204916236ethanol+carbon source
3204915740formate+carbon source
3204928757fructose+carbon source
3204917234glucose+carbon source
3204917632nitrate+reduction

enzymes

@refvalueactivityec
32049catalase+1.11.1.6
32049urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 32049
  • sample type: seawater

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 32049
  • description: Methylobacterium salsuginis strain MR 16S ribosomal RNA gene, complete sequence
  • accession: EF015478
  • length: 1480
  • database: nuccore
  • NCBI tax ID: 414703

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methylorubrum salsuginis CGMCC 1.6474GCA_900114375scaffoldncbi414703
66792Methylorubrum salsuginis strain CGMCC 1.6474414703.4wgspatric414703
66792Methylorubrum salsuginis CGMCC 1.64742617270908draftimg414703

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileyes88.054no
flagellatedno76.912no
gram-positiveno98.02yes
anaerobicno97.211no
aerobicyes91.772no
halophileno90.93no
spore-formingno94.334no
glucose-fermentno88.53no
thermophileno98.867yes
glucose-utilyes89.149yes

External links

@ref: 32049

culture collection no.: CGMCC 1.6474, NCCB 100140

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17684240Methylobacterium salsuginis sp. nov., isolated from seawater.Wang X, Sahr F, Xue T, Sun BInt J Syst Evol Microbiol10.1099/ijs.0.64877-02007Alcohol Oxidoreductases/genetics, Bacterial Proteins/genetics, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Methylobacterium/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyEnzymology
Phylogeny30024371Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.Green PN, Ardley JKInt J Syst Evol Microbiol10.1099/ijsem.0.0028562018Bacterial Typing Techniques, DNA, Bacterial/genetics, Methylobacterium/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32049Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172829928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1