Strain identifier

BacDive ID: 134166

Type strain: Yes

Species: Halovivax asiaticus

Strain Designation: EJ-46

Strain history: CGMCC 1.4248 <-- A. Ventosa EJ-46.

NCBI tax ID(s): 1227490 (strain), 332953 (species)

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General

@ref: 31642

BacDive-ID: 134166

keywords: genome sequence, 16S sequence, Archaea, aerobe, Gram-negative, rod-shaped

description: Halovivax asiaticus EJ-46 is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from saline lake.

NCBI tax id

NCBI tax idMatching level
332953species
1227490strain

strain history

  • @ref: 67770
  • history: CGMCC 1.4248 <-- A. Ventosa EJ-46.

doi: 10.13145/bacdive134166.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Natrialbales
  • family: Natrialbaceae
  • genus: Halovivax
  • species: Halovivax asiaticus
  • full scientific name: Halovivax asiaticus Castillo et al. 2006

@ref: 31642

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Natrialbales

family: Natrialbaceae

genus: Halovivax

species: Halovivax asiaticus

strain designation: EJ-46

type strain: yes

Morphology

cell morphology

  • @ref: 31642
  • gram stain: negative
  • cell length: 04-05 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31642
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31642positivegrowth25-45
31642positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31642positivegrowth06-09alkaliphile
31642positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31642
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31642
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31642NaClpositivegrowth15-25 %
31642NaClpositiveoptimum20 %

observation

  • @ref: 31642
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3164230089acetate+carbon source
3164229987glutamate+carbon source
3164217716lactose+carbon source
3164217272propionate+carbon source
3164216634raffinose+carbon source
3164227082trehalose+carbon source
3164218222xylose+carbon source

metabolite production

  • @ref: 31642
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
31642catalase+1.11.1.6
31642cytochrome oxidase+1.9.3.1
31642urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31642saline lake
67770Sediment of the saline Lake EjinorInner MongoliaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187833.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68915;97_89565;98_121856;99_187833&stattab=map
  • Last taxonomy: Halovivax
  • 16S sequence: AB477227
  • Sequence Identity:
  • Total samples: 2
  • aquatic counts: 1
  • animal counts: 1

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
31642Halovivax asiaticus partial 16S rRNA gene, type strain EJ-46TAM0399781378nuccore332953
67770Halovivax asiaticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 14624AB4772271434ena332953

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halovivax asiaticus JCM 146242554235485draftimg1227490
67770Halovivax asiaticus JCM 14624GCA_000337515contigncbi1227490
66792Halovivax asiaticus JCM 146241227490.4wgspatric1227490

GC content

@refGC-contentmethod
3164260.3
6777060.3thermal denaturation, midpoint method (Tm)

External links

@ref: 31642

culture collection no.: CGMCC 1.4248, CECT 7098, JCM 14624

straininfo link

  • @ref: 91764
  • straininfo: 290974

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16585691Halovivax asiaticus gen. nov., sp. nov., a novel extremely halophilic archaeon isolated from Inner Mongolia, China.Castillo AM, Gutierrez MC, Kamekura M, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.63954-02006China, Geologic Sediments/*microbiology, Halobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/analysis/genetics, Sodium Chloride/*metabolism, Water MicrobiologyMetabolism
Phylogeny17473252Halovivax ruber sp. nov., an extremely halophilic archaeon isolated from Lake Xilinhot, Inner Mongolia, China.Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.64899-02007Anti-Bacterial Agents/pharmacology, Carbohydrate Metabolism, China, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Halobacteriaceae/chemistry/*classification/*isolation & purification/physiology, Membrane Lipids/analysis, Microscopy, Phase-Contrast, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/metabolism, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Water MicrobiologyMetabolism
Phylogeny25015679Halovivax limisalsi sp. nov., an extremely halophilic archaeon from hypersaline mud.Amoozegar MA, Makhdoumi-Kakhki A, Mehrshad M, Riazi S, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.063297-02014Base Composition, DNA, Archaeal, Geologic Sediments/*microbiology, Halobacteriaceae/*classification/genetics/isolation & purification, Iran, Lakes/*microbiology, Lipids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Water MicrobiologyGenetics
Phylogeny25269847Halovivax cerinus sp. nov., an extremely halophilic archaeon from a hypersaline lake.Amoozegar MA, Makhdoumi-Kakhki A, Mehrshad M, Rasooli M, Fazeli SAS, Sproer C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.069757-02014Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Iran, Lakes/*microbiology, Lipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31642Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172792528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91764Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID290974.1