Strain identifier
BacDive ID: 134163
Type strain: 
Species: Shewanella morhuae
Strain Designation: U1417
NCBI tax ID(s): 365591 (species)
version 9 (current version)
General
@ref: 31629
BacDive-ID: 134163
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Shewanella morhuae U1417 is an aerobe, Gram-negative, motile bacterium that was isolated from marine fish.
NCBI tax id
- NCBI tax id: 365591
- Matching level: species
doi: 10.13145/bacdive134163.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella morhuae
- full scientific name: Shewanella morhuae Satomi et al. 2006
@ref: 31629
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella morhuae
strain designation: U1417
type strain: yes
Morphology
cell morphology
- @ref: 31629
- gram stain: negative
- cell length: 1-1.2 µm
- cell width: 0.5-0.7 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31629
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 31629 | positive | growth | 04-25 |
| 31629 | positive | optimum | 25 |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31629 | positive | growth | 7 |
| 31629 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31629
- oxygen tolerance: aerobe
spore formation
- @ref: 31629
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31629 | NaCl | positive | growth | 6 % |
| 31629 | NaCl | positive | optimum | 6 % |
observation
- @ref: 31629
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31629 | 24265 | gluconate | + | carbon source |
| 31629 | 25115 | malate | + | carbon source |
| 31629 | 506227 | N-acetylglucosamine | + | carbon source |
| 31629 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 31629
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31629 | catalase | + | 1.11.1.6 |
| 31629 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 31629
- sample type: marine fish
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Fishes |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 31629 | Shewanella morhuae gene for 16S rRNA, partial sequence, strain: U1417 | AB205576 | 1426 | nuccore | 365591 |
| 124043 | Shewanella morhuae gene for 16S rRNA, partial sequence, strain: NBRC 100978. | AB681314 | 1468 | nuccore | 365591 |
GC content
- @ref: 31629
- GC-content: 44
External links
@ref: 31629
culture collection no.: ATCC BAA-1205, NBRC 100978
straininfo link
- @ref: 91761
- straininfo: 289876
literature
- topic: Phylogeny
- Pubmed-ID: 16403893
- title: Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea.
- authors: Satomi M, Vogel BF, Gram L, Venkateswaran K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63931-0
- year: 2006
- mesh: Animals, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/chemistry, Denmark, Flounder/*microbiology, Gadiformes/*microbiology, Molecular Sequence Data, Oceans and Seas, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Shewanella/chemistry/*classification/isolation & purification/physiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31629 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27914 | 28776041 |
| 91761 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID289876.1 | ||
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |