Strain identifier
BacDive ID: 134155
Type strain: 
Species: Kitasatospora sampliensis
Strain Designation: VT-36
NCBI tax ID(s): 228655 (species)
version 8.1 (current version)
General
@ref: 31575
BacDive-ID: 134155
DSM-Number: 44898
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Kitasatospora sampliensis VT-36 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 228655
- Matching level: species
doi: 10.13145/bacdive134155.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Kitasatospora
- species: Kitasatospora sampliensis
- full scientific name: Kitasatospora sampliensis Mayilraj et al. 2006
@ref: 31575
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptomycetales
family: Streptomycetaceae
genus: Kitasatospora
species: Kitasatospora sampliensis
strain designation: VT-36
type strain: yes
Morphology
cell morphology
- @ref: 31575
- gram stain: positive
- cell shape: rod-shaped
pigmentation
- @ref: 31575
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31575 | positive | growth | 30-37 | mesophilic |
| 31575 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31575 | positive | growth | 07-09 | alkaliphile |
| 31575 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 31575
- oxygen tolerance: aerobe
spore formation
- @ref: 31575
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31575 | NaCl | positive | growth | 0-2.5 % |
| 31575 | NaCl | positive | optimum | 0-2.5 % |
observation
- @ref: 31575
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31575 | 22599 | arabinose | + | carbon source |
| 31575 | 28757 | fructose | + | carbon source |
| 31575 | 29864 | mannitol | + | carbon source |
| 31575 | 16634 | raffinose | + | carbon source |
| 31575 | 26546 | rhamnose | + | carbon source |
| 31575 | 17992 | sucrose | + | carbon source |
| 31575 | 18222 | xylose | + | carbon source |
| 31575 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
- @ref: 31575
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_176803.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_148;97_159;98_191;99_176803&stattab=map
- Last taxonomy: Kitasatospora sampliensis
- 16S sequence: AY260167
- Sequence Identity:
- Total samples: 45
- soil counts: 34
- aquatic counts: 2
- animal counts: 5
- plant counts: 4
Sequence information
16S sequences
- @ref: 31575
- description: Kitasatospora sampliensis strain VT-36 16S ribosomal RNA gene, partial sequence
- accession: AY260167
- length: 1481
- database: nuccore
- NCBI tax ID: 228655
GC content
- @ref: 31575
- GC-content: 76.5
External links
@ref: 31575
culture collection no.: MTCC 6546, DSM 44898, JCM 13010
straininfo link
- @ref: 91753
- straininfo: 290978
literature
- topic: Phylogeny
- Pubmed-ID: 16514020
- title: Kitasatospora sampliensis sp. nov., a novel actinobacterium isolated from soil of a sugar-cane field in India.
- authors: Mayilraj S, Krishnamurthi S, Saha P, Saini HS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63836-0
- year: 2006
- mesh: Actinobacteria/*classification/genetics/isolation & purification/physiology, Carbohydrates, DNA, Ribosomal/chemistry, India, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31575 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27864 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91753 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID290978.1 |