Strain identifier

BacDive ID: 134153

Type strain: Yes

Species: Alteromonas hispanica

Strain Designation: F-32

Strain history: CIP <- 2005, CECT

NCBI tax ID(s): 315421 (species)

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General

@ref: 31560

BacDive-ID: 134153

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Alteromonas hispanica F-32 is an aerobe, Gram-negative, motile bacterium that was isolated from Environment, Hypersaline water sample taken at Fuente de Piedra.

NCBI tax id

  • NCBI tax id: 315421
  • Matching level: species

strain history

@refhistory
332772005, CECT
119918CIP <- 2005, CECT

doi: 10.13145/bacdive134153.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas hispanica
  • full scientific name: Alteromonas hispanica Martínez-Checa et al. 2005

@ref: 31560

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas hispanica

strain designation: F-32

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31560negative1.5 µm0.75 µmrod-shapedyes
69480yes97.568
69480negative99.989
119918negativeoval-shapedno

pigmentation

  • @ref: 31560
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33277Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119918CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
31560positivegrowth04-40
31560positiveoptimum32mesophilic
33277positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
31560positivegrowth05-10alkaliphile
31560positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31560
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31560no
69481no100
69480no99.993

halophily

@refsaltgrowthtested relationconcentration
31560NaClpositivegrowth7.5-15 %
31560NaClpositiveoptimum8.75 %

observation

  • @ref: 31560
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
315605291gelatin+carbon source
3156017306maltose+carbon source
3156029864mannitol+carbon source
3156053424tween 20+carbon source
3156053426tween 80+carbon source
315604853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11991817632nitrate-reduction
11991816301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
3156016136hydrogen sulfideyes
11991835581indoleno

enzymes

@refvalueactivityec
31560alkaline phosphatase+3.1.3.1
31560catalase+1.11.1.6
31560gelatinase+
31560cytochrome oxidase+1.9.3.1
119918oxidase+
119918alcohol dehydrogenase-1.1.1.1
119918catalase+1.11.1.6
119918lysine decarboxylase-4.1.1.18
119918ornithine decarboxylase-4.1.1.17
119918urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119918-+++-+--++++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119918------------------------+------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 119918
  • sample type: Environment, Hypersaline water sample taken at Fuente de Piedra
  • geographic location: Malaga
  • country: Spain
  • origin.country: ESP
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_2473.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_828;99_2473&stattab=map
  • Last taxonomy: Alteromonas
  • 16S sequence: AY926460
  • Sequence Identity:
  • Total samples: 1257
  • soil counts: 8
  • aquatic counts: 1241
  • animal counts: 5
  • plant counts: 3

Safety information

risk assessment

  • @ref: 119918
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 31560
  • description: Alteromonas hispanica strain F-32 16S ribosomal RNA gene, partial sequence
  • accession: AY926460
  • length: 1479
  • database: nuccore
  • NCBI tax ID: 315421

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteromonas hispanica LMG 22958GCA_010500915scaffoldncbi315421
66792Alteromonas hispanica strain LMG 22958315421.4wgspatric315421

GC content

  • @ref: 31560
  • GC-content: 46.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes93.074yes
flagellatedyes91.265no
gram-positiveno99.278yes
anaerobicno97.156yes
aerobicyes89.143yes
halophileyes83.355yes
spore-formingno96.899yes
glucose-utilyes89.833no
thermophileno99.402yes
glucose-fermentno86.699no

External links

@ref: 31560

culture collection no.: CECT 7067, LMG 22958, CIP 109083

straininfo link

  • @ref: 91751
  • straininfo: 135326

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16280501Alteromonas hispanica sp. nov., a polyunsaturated-fatty-acid-producing, halophilic bacterium isolated from Fuente de Piedra, southern Spain.Martinez-Checa F, Bejar V, Llamas I, Del Moral A, Quesada EInt J Syst Evol Microbiol10.1099/ijs.0.63809-02005Alteromonas/classification/*isolation & purification/physiology/ultrastructure, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Fatty Acids, Unsaturated/*metabolism, Molecular Sequence Data, Phylogeny, Quinones/analysis, SpainEnzymology
Phylogeny19390988Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone.Chen YG, Xiao HD, Tang SK, Zhang YQ, Borrathybay E, Cui XL, Li WJ, Liu YQAntonie Van Leeuwenhoek10.1007/s10482-009-9341-82009Alteromonas/classification/genetics/*isolation & purification/metabolism, Animals, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sea Anemones/*microbiology, Seawater/*microbiology, Sodium Chloride/*metabolismMetabolism
Phylogeny28905702Alteromonas pelagimontana sp. nov., a marine exopolysaccharide-producing bacterium isolated from the Southwest Indian Ridge.Sinha RK, Krishnan KP, Singh A, Thomas FA, Jain A, John Kurian PInt J Syst Evol Microbiol10.1099/ijsem.0.0022452017Alteromonas/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny32614764Alteromonas profundi sp. nov., isolated from the Indian Ocean.Shen X, Zhu S, Dong B, Chen Y, Xue Z, Ren N, Chen T, Chen X, Yang J, Chen JInt J Syst Evol Microbiol10.1099/ijsem.0.0043082020Alteromonas/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31560Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172785028776041
33277Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6785
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91751Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID135326.1
119918Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109083Collection of Institut Pasteur (CIP 109083)