Strain identifier
BacDive ID: 134141
Type strain: 
Species: Winogradskyella poriferorum
Strain Designation: UST030701-295
Strain history: S. Lau UST030701-295.
NCBI tax ID(s): 307627 (species)
version 8.1 (current version)
General
@ref: 31485
BacDive-ID: 134141
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Winogradskyella poriferorum UST030701-295 is an aerobe, Gram-negative, motile bacterium that was isolated from Surface of the sponge Lissodendoryx isodictyalis.
NCBI tax id
- NCBI tax id: 307627
- Matching level: species
strain history
- @ref: 67770
- history: S. Lau UST030701-295.
doi: 10.13145/bacdive134141.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Winogradskyella
- species: Winogradskyella poriferorum
- full scientific name: Winogradskyella poriferorum Lau et al. 2005
@ref: 31485
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Winogradskyella
species: Winogradskyella poriferorum
strain designation: UST030701-295
type strain: yes
Morphology
cell morphology
- @ref: 31485
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 31485
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31485 | positive | growth | 12-44 | |
| 31485 | positive | optimum | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31485 | positive | growth | 06-10 | alkaliphile |
| 31485 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 31485
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31485 | NaCl | positive | growth | 01-04 % |
| 31485 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 67770
- observation: quinones: MK-6
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31485 | 5291 | gelatin | + | carbon source |
| 31485 | 53424 | tween 20 | + | carbon source |
| 31485 | 53423 | tween 40 | + | carbon source |
| 31485 | 53426 | tween 80 | + | carbon source |
| 31485 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31485 | acid phosphatase | + | 3.1.3.2 |
| 31485 | alkaline phosphatase | + | 3.1.3.1 |
| 31485 | catalase | + | 1.11.1.6 |
| 31485 | gelatinase | + | |
| 31485 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Surface of the sponge Lissodendoryx isodictyalis
- host species: Lissodendoryx isodictyalis
- country: Bahamas
- origin.country: BHS
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_36089.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_3762;97_21234;98_26611;99_36089&stattab=map
- Last taxonomy: Winogradskyella
- 16S sequence: AY848823
- Sequence Identity:
- Total samples: 554
- soil counts: 10
- aquatic counts: 515
- animal counts: 19
- plant counts: 10
Sequence information
16S sequences
- @ref: 31485
- description: Winogradskyella poriferorum strain UST030701-295 16S ribosomal RNA gene, partial sequence
- accession: AY848823
- length: 1441
- database: nuccore
- NCBI tax ID: 307627
GC content
| @ref | GC-content | method |
|---|---|---|
| 31485 | 32.8 | |
| 67770 | 32.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 31485
culture collection no.: NRRL B-41101, JCM 12885, CIP 108875, KCTC 62505
straininfo link
- @ref: 91740
- straininfo: 265413
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16014486 | Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. | Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Lau KWK, Wu M, Wong PK, Pawlik JR, Qian PY | Int J Syst Evol Microbiol | 10.1099/ijs.0.63661-0 | 2005 | Animals, Bacterial Typing Techniques, Bahamas, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 19700451 | Winogradskyella exilis sp. nov., isolated from the starfish Stellaster equestris, and emended description of the genus Winogradskyella. | Ivanova EP, Christen R, Gorshkova NM, Zhukova NV, Kurilenko VV, Crawford RJ, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/ijs.0.012476-0 | 2009 | Animals, Base Composition, Base Sequence, Flavobacteriaceae/*classification/genetics/isolation & purification, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Starfish/*microbiology, Vitamin K 2/analysis | Genetics |
| Pathogenicity | 21664125 | Poly-ethers from Winogradskyella poriferorum: Antifouling potential, time-course study of production and natural abundance. | Dash S, Nogata Y, Zhou X, Zhang Y, Xu Y, Guo X, Zhang X, Qian PY | Bioresour Technol | 10.1016/j.biortech.2011.05.034 | 2011 | Animals, Biofilms/drug effects, Biofouling/*prevention & control, Complex Mixtures/chemistry, Embryo, Nonmammalian/drug effects, Ethers/chemistry/*metabolism/pharmacology, Flavobacteriaceae/*metabolism, Larva/drug effects/growth & development, Microbial Sensitivity Tests, Nuclear Magnetic Resonance, Biomolecular, Polychaeta/drug effects/growth & development, Rhodobacteraceae/drug effects, Thoracica/drug effects/growth & development, Vibrio/drug effects, Zebrafish/embryology | Metabolism |
| Phylogeny | 21984672 | Winogradskyella aquimaris sp. nov., isolated from seawater. | Lee SY, Park S, Oh TK, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.034090-0 | 2011 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phenotype, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 23124762 | Winogradskyella jejuensis sp. nov., a marine bacterium isolated from a brown alga Carpopeltis affinis. | Kim JY, Oh DC | J Microbiol | 10.1007/s12275-012-2447-0 | 2012 | Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phaeophyta/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Metabolism |
| Phylogeny | 30010527 | Winogradskyella tangerina sp. nov., a member of the Flavobacteriaceae isolated from coastal sediment. | Wang C, Han JR, Liu CL, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002908 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31485 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27783 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91740 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID265413.1 |