Strain identifier
BacDive ID: 134121
Type strain: 
Species: Lacinutrix copepodicola
Strain Designation: DJ3
NCBI tax ID(s): 291184 (species)
version 8.1 (current version)
General
@ref: 31431
BacDive-ID: 134121
keywords: 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped
description: Lacinutrix copepodicola DJ3 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 291184
- Matching level: species
doi: 10.13145/bacdive134121.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Lacinutrix
- species: Lacinutrix copepodicola
- full scientific name: Lacinutrix copepodicola Bowman and Nichols 2005
@ref: 31431
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Lacinutrix
species: Lacinutrix copepodicola
strain designation: DJ3
type strain: yes
Morphology
cell morphology
- @ref: 31431
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.45 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31431
- production: yes
Culture and growth conditions
culture temp
- @ref: 31431
- growth: positive
- type: optimum
- temperature: 12.5
- range: psychrophilic
Physiology and metabolism
oxygen tolerance
- @ref: 31431
- oxygen tolerance: aerobe
spore formation
- @ref: 31431
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31431 | NaCl | positive | growth | 0.1-2.0 % |
| 31431 | NaCl | positive | optimum | 0.35 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31431 | 5291 | gelatin | + | carbon source |
| 31431 | 17234 | glucose | + | carbon source |
| 31431 | 28087 | glycogen | + | carbon source |
| 31431 | 17306 | maltose | + | carbon source |
| 31431 | 37684 | mannose | + | carbon source |
| 31431 | 26271 | proline | + | carbon source |
| 31431 | 17992 | sucrose | + | carbon source |
| 31431 | 53426 | tween 80 | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31431 | alkaline phosphatase | + | 3.1.3.1 |
| 31431 | catalase | + | 1.11.1.6 |
| 31431 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 31431
- sample type: freshwater (river, lake, pond)
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #River (Creek) |
Sequence information
16S sequences
- @ref: 31431
- description: Haploniscus sp. 1-MJR-2004 isolate HA24 16S ribosomal RNA gene, partial sequence; mitochondrial
- accession: AY693401
- length: 499
- database: nuccore
- NCBI tax ID: 263170
GC content
- @ref: 31431
- GC-content: 37
External links
@ref: 31431
culture collection no.: ACAM 1055, CIP 108538
literature
- topic: Phylogeny
- Pubmed-ID: 16014468
- title: Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.
- authors: Bowman JP, Nichols DS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63527-0
- year: 2005
- mesh: Amphipoda/microbiology, Animals, Antarctic Regions, Bacterial Typing Techniques, Copepoda/microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Environment, Eukaryota/microbiology, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Genotype, Ice Cover/microbiology, Molecular Sequence Data, Phenotype, Phylogeny, Quartz, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31431 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27737 | 28776041 |