Strain identifier

BacDive ID: 134093

Type strain: Yes

Species: Rubrobacter taiwanensis

Strain Designation: LS-293

Strain history: BCRC 17173 <-- M.-Y. Chen LS-293.

NCBI tax ID(s): 185139 (species)

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General

@ref: 31238

BacDive-ID: 134093

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped

description: Rubrobacter taiwanensis LS-293 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 185139
  • Matching level: species

strain history

  • @ref: 67770
  • history: BCRC 17173 <-- M.-Y. Chen LS-293.

doi: 10.13145/bacdive134093.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Rubrobacteria
  • order: Rubrobacterales
  • family: Rubrobacteraceae
  • genus: Rubrobacter
  • species: Rubrobacter taiwanensis
  • full scientific name: Rubrobacter taiwanensis Chen et al. 2004

@ref: 31238

domain: Bacteria

phylum: Actinobacteria

class: Rubrobacteria

order: Rubrobacterales

family: Rubrobacteraceae

genus: Rubrobacter

species: Rubrobacter taiwanensis

strain designation: LS-293

type strain: yes

Morphology

cell morphology

  • @ref: 31238
  • gram stain: positive
  • cell length: 2 µm
  • cell width: 0.95 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31238
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31238positivegrowth30-70
31238positiveoptimum60thermophilic
67770positivegrowth55thermophilic

culture pH

@refabilitytypepHPH range
31238positivegrowth06-11alkaliphile
31238positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 31238
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31238
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31238NaClpositivegrowth0-5 %
31238NaClpositiveoptimum2.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3123822599arabinose+carbon source
3123829016arginine+carbon source
3123817057cellobiose+carbon source
3123828757fructose+carbon source
3123828260galactose+carbon source
312385291gelatin+carbon source
3123817234glucose+carbon source
3123829987glutamate+carbon source
3123817716lactose+carbon source
3123817306maltose+carbon source
3123837684mannose+carbon source
3123828053melibiose+carbon source
3123826271proline+carbon source
3123816634raffinose+carbon source
3123817822serine+carbon source
3123827082trehalose+carbon source
3123818222xylose+carbon source

enzymes

@refvalueactivityec
31238catalase+1.11.1.6
31238cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31238hot spring
67770Lu-shan hot springsTaiwanTWNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_150524.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_408;96_57160;97_73905;98_99464;99_150524&stattab=map
  • Last taxonomy: Rubrobacter taiwanensis subclade
  • 16S sequence: AF465803
  • Sequence Identity:
  • Total samples: 300
  • soil counts: 103
  • aquatic counts: 53
  • animal counts: 130
  • plant counts: 14

Sequence information

16S sequences

  • @ref: 31238
  • description: Rubrobacter taiwanensis strain LS-293 16S ribosomal RNA gene, partial sequence
  • accession: AF465803
  • length: 1476
  • database: nuccore
  • NCBI tax ID: 185139

GC content

@refGC-contentmethod
3123868.5
6777068.5high performance liquid chromatography (HPLC)

External links

@ref: 31238

culture collection no.: ATCC BAA 406, BCRC 17173, JCM 12932

straininfo link

  • @ref: 91702
  • straininfo: 134307

literature

  • topic: Phylogeny
  • Pubmed-ID: 15388754
  • title: Rubrobacter taiwanensis sp. nov., a novel thermophilic, radiation-resistant species isolated from hot springs.
  • authors: Chen MY, Wu SH, Lin GH, Lu CP, Lin YT, Chang WC, Tsay SS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63109-0
  • year: 2004
  • mesh: Actinobacteria/*classification/*isolation & purification/physiology/radiation effects, Aerobiosis, Bacterial Typing Techniques, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Gamma Rays, Genes, rRNA/genetics, Hot Springs/*microbiology, Hot Temperature, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Temperature, Water Microbiology
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31238Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172756228776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91702Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID134307.1