Strain identifier

BacDive ID: 134090

Type strain: Yes

Species: Zobellia laminariae

NCBI tax ID(s): 248906 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 31228

BacDive-ID: 134090

keywords: aerobe, Bacteria, 16S sequence, Gram-negative, genome sequence, motile

description: Zobellia laminariae KMM 3676 is an aerobe, Gram-negative, motile bacterium that was isolated from Brown alga,Laminaria japonica.

NCBI tax id

  • NCBI tax id: 248906
  • Matching level: species

doi: 10.13145/bacdive134090.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Zobellia
  • species: Zobellia laminariae
  • full scientific name: Zobellia laminariae Nedashkovskaya et al. 2004

@ref: 31228

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Zobellia

species: Zobellia laminariae

type strain: yes

Morphology

cell morphology

  • @ref: 31228
  • gram stain: negative
  • cell length: 1.3 µm
  • cell width: 0.45 µm
  • motility: yes
  • flagellum arrangement: gliding

pigmentation

  • @ref: 31228
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 40023
  • name: Marine agar (MA)
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
31228positivegrowth04-30
31228positiveoptimum22psychrophilic
40023positivegrowth25mesophilic
57501positivegrowth22-25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31228aerobe
57501aerobe

halophily

@refsaltgrowthtested relationconcentration
31228NaClpositivegrowth1.5-6 %
31228NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3122822599arabinose+carbon source
3122817057cellobiose+carbon source
3122833984fucose+carbon source
3122817234glucose+carbon source
3122817716lactose+carbon source
3122817306maltose+carbon source
3122829864mannitol+carbon source
3122837684mannose+carbon source
3122816634raffinose+carbon source
3122826546rhamnose+carbon source
3122817992sucrose+carbon source
3122853423tween 40+carbon source
3122817632nitrate+reduction

enzymes

@refvalueactivityec
31228alkaline phosphatase+3.1.3.1
31228catalase+1.11.1.6
31228gelatinase+
31228cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 57501
  • sample type: Brown alga,Laminaria japonica
  • sampling date: 2000-06-01
  • geographic location: Sea of Japan
  • country: Pacific Ocean

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae
  • Cat3: #Brown Algae

Sequence information

16S sequences

  • @ref: 31228
  • description: Zobellia laminariae gene for 16S ribosomal RNA, partial sequence
  • accession: AB121975
  • length: 1384
  • database: nuccore
  • NCBI tax ID: 248906

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zobellia laminariae KMM 3676GCA_009725995scaffoldncbi248906
66792Zobellia laminariae strain KMM 3676248906.8wgspatric248906
66792Zobellia laminariae KMM 36762910277695draftimg248906

GC content

  • @ref: 31228
  • GC-content: 36.5

External links

@ref: 31228

culture collection no.: KMM 3676, CIP 108563, LMG 22070, CCUG 47083

straininfo link

@refpassport
20218http://www.straininfo.net/strains/370949
20218http://www.straininfo.net/strains/381570

Reference

@idauthorstitledoi/urljournalpubmedID_cross_referencecatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2755410.1099/ijs.0.63091-015388723
31228Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127554
40023Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6199
57501Curators of the CCUGhttps://www.ccug.se/strain?id=47083Culture Collection University of Gothenburg (CCUG) (CCUG 47083)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes