Strain identifier
BacDive ID: 134048
Type strain: 
Species: Formosa undariae
Strain Designation: WS-MY3
NCBI tax ID(s): 1325436 (species)
version 8.1 (current version)
General
@ref: 31135
BacDive-ID: 134048
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Formosa undariae WS-MY3 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1325436
- Matching level: species
doi: 10.13145/bacdive134048.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Formosa
- species: Formosa undariae
- full scientific name: Formosa undariae Park et al. 2013
@ref: 31135
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Formosa
species: Formosa undariae
strain designation: WS-MY3
type strain: yes
Morphology
cell morphology
- @ref: 31135
- gram stain: negative
- cell length: 1.4 µm
- cell width: 0.55 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31135
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31135 | positive | growth | 04-30 | |
| 31135 | positive | optimum | 25 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31135 | positive | growth | 5.5-8.0 |
| 31135 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31135
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31135 | NaCl | positive | growth | 0-9 % |
| 31135 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 31135
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31135 | 17057 | cellobiose | + | carbon source |
| 31135 | 28757 | fructose | + | carbon source |
| 31135 | 28260 | galactose | + | carbon source |
| 31135 | 17234 | glucose | + | carbon source |
| 31135 | 17306 | maltose | + | carbon source |
| 31135 | 37684 | mannose | + | carbon source |
| 31135 | 18222 | xylose | + | carbon source |
| 31135 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31135 | acid phosphatase | + | 3.1.3.2 |
| 31135 | alkaline phosphatase | + | 3.1.3.1 |
| 31135 | catalase | + | 1.11.1.6 |
| 31135 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 31135
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
Sequence information
16S sequences
- @ref: 31135
- description: Formosa undariae strain WS-MY3 16S ribosomal RNA gene, partial sequence
- accession: KC832835
- length: 1442
- database: nuccore
- NCBI tax ID: 1325436
GC content
- @ref: 31135
- GC-content: 37.3
External links
@ref: 31135
culture collection no.: KCTC 32328, CECT 8286
straininfo link
- @ref: 91684
- straininfo: 391329
literature
- topic: Phylogeny
- Pubmed-ID: 23749280
- title: Formosa undariae sp. nov., isolated from a reservoir containing the brown algae Undaria pinnatifida.
- authors: Park S, Lee JS, Lee KC, Yoon JH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.053157-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Undaria, Vitamin K 2/analogs & derivatives/chemistry, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31135 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27463 | 28776041 |
| 91684 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391329.1 |