Strain identifier
BacDive ID: 134010
Type strain: 
Species: Tenacibaculum xiamenense
Strain Designation: WJ-1
NCBI tax ID(s): 1261553 (species)
version 8.1 (current version)
General
@ref: 31050
BacDive-ID: 134010
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Tenacibaculum xiamenense WJ-1 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1261553
- Matching level: species
doi: 10.13145/bacdive134010.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Tenacibaculum
- species: Tenacibaculum xiamenense
- full scientific name: Tenacibaculum xiamenense Li et al. 2013
@ref: 31050
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Tenacibaculum
species: Tenacibaculum xiamenense
strain designation: WJ-1
type strain: yes
Morphology
cell morphology
- @ref: 31050
- gram stain: negative
- cell length: 6.5 µm
- cell width: 0.3 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 31050
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31050 | positive | growth | 16-38 | |
| 31050 | positive | optimum | 29 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31050 | positive | growth | 6.0-9.0 | alkaliphile |
| 31050 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31050
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31050 | NaCl | positive | growth | 02-04 % |
| 31050 | NaCl | positive | optimum | 3 % |
observation
- @ref: 31050
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31050 | 22599 | arabinose | + | carbon source |
| 31050 | 17234 | glucose | + | carbon source |
| 31050 | 17992 | sucrose | + | carbon source |
| 31050 | 53424 | tween 20 | + | carbon source |
| 31050 | 53423 | tween 40 | + | carbon source |
| 31050 | 53425 | tween 60 | + | carbon source |
| 31050 | 53426 | tween 80 | + | carbon source |
| 31050 | 4853 | esculin | + | hydrolysis |
| 31050 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31050 | acid phosphatase | + | 3.1.3.2 |
| 31050 | alkaline phosphatase | + | 3.1.3.1 |
| 31050 | catalase | + | 1.11.1.6 |
| 31050 | gelatinase | + | |
| 31050 | cytochrome oxidase | + | 1.9.3.1 |
| 31050 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 31050
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_148127.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_2278;97_10279;98_97990;99_148127&stattab=map
- Last taxonomy: Tenacibaculum xiamenense subclade
- 16S sequence: JX984443
- Sequence Identity:
- Total samples: 43
- aquatic counts: 41
- animal counts: 2
Sequence information
16S sequences
- @ref: 31050
- description: Tenacibaculum xiamenense strain WJ-1 16S ribosomal RNA gene, partial sequence
- accession: JX984443
- length: 1444
- database: nuccore
- NCBI tax ID: 1261553
GC content
- @ref: 31050
- GC-content: 33.2
External links
@ref: 31050
culture collection no.: CGMCC 1.12378, LMG 27422
straininfo link
- @ref: 91666
- straininfo: 387534
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23543502 | Tenacibaculum xiamenense sp. nov., an algicidal bacterium isolated from coastal seawater. | Li Y, Wei J, Yang C, Lai Q, Chen Z, Li D, Zhang H, Tian Y, Zheng W, Zheng T | Int J Syst Evol Microbiol | 10.1099/ijs.0.050765-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
| Phylogeny | 26345588 | Tenacibaculum holothuriorum sp. nov., isolated from the sea cucumber Apostichopus japonicus intestine. | Wang L, Li X, Hu D, Lai Q, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000574 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Intestines/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Stichopus/*microbiology, Tenacibaculum/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31050 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27380 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91666 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID387534.1 |