Strain identifier

BacDive ID: 133998

Type strain: Yes

Species: Maribacter aestuarii

Strain Designation: GY20

Strain history: C. O. Jeon GY20.

NCBI tax ID(s): 1130723 (species)

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General

@ref: 31025

BacDive-ID: 133998

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Maribacter aestuarii GY20 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1130723
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. O. Jeon GY20.

doi: 10.13145/bacdive133998.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter aestuarii
  • full scientific name: Maribacter aestuarii Lo et al. 2013

@ref: 31025

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter aestuarii

strain designation: GY20

type strain: yes

Morphology

cell morphology

  • @ref: 31025
  • gram stain: negative
  • cell length: 2.2 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

pigmentation

  • @ref: 31025
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31025positivegrowth10-30
31025positiveoptimum25mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31025positivegrowth6.5-10.5alkaliphile
31025positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31025
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31025
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31025NaClpositivegrowth01-05 %
31025NaClpositiveoptimum2.5 %

observation

@refobservation
31025aggregates in clumps
67770quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3102530089acetate+carbon source
3102515963ribitol+carbon source
3102521217L-alaninamide+carbon source
3102516449alanine+carbon source
3102522599arabinose+carbon source
3102517057cellobiose+carbon source
3102523652dextrin+carbon source
3102528757fructose+carbon source
3102528260galactose+carbon source
3102517234glucose+carbon source
3102529987glutamate+carbon source
3102517596inosine+carbon source
3102524996lactate+carbon source
3102517716lactose+carbon source
3102517306maltose+carbon source
3102529864mannitol+carbon source
3102537684mannose+carbon source
3102528053melibiose+carbon source
3102537657methyl D-glucoside+carbon source
31025506227N-acetylglucosamine+carbon source
3102518257ornithine+carbon source
3102516634raffinose+carbon source
3102517822serine+carbon source
3102530911sorbitol+carbon source
3102530031succinate+carbon source
3102517992sucrose+carbon source
3102517748thymidine+carbon source
3102527082trehalose+carbon source
3102553423tween 40+carbon source
3102516704uridine+carbon source
3102518222xylose+carbon source
310254853esculin+hydrolysis

enzymes

@refvalueactivityec
31025acid phosphatase+3.1.3.2
31025alkaline phosphatase+3.1.3.1
31025catalase+1.11.1.6
31025cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31025marine sediment
67770Sediment sample of tidal flat at Gwangyang BayRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_23080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_1222;97_14109;98_17395;99_23080&stattab=map
  • Last taxonomy: Maribacter aestuarii subclade
  • 16S sequence: JN642273
  • Sequence Identity:
  • Total samples: 108
  • soil counts: 1
  • aquatic counts: 101
  • animal counts: 6

Sequence information

16S sequences

  • @ref: 31025
  • description: Maribacter aestuarii strain GY20 16S ribosomal RNA gene, partial sequence
  • accession: JN642273
  • length: 1451
  • database: nuccore
  • NCBI tax ID: 1130723

Genome sequences

  • @ref: 66792
  • description: Maribacter aestuarii JCM18631
  • accession: GCA_027474845
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 1130723

GC content

@refGC-contentmethod
3102539.8
6777039.8thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno88.008no
flagellatedno96.021no
gram-positiveno97.503yes
anaerobicno99.227yes
aerobicyes88.809yes
halophileno70.989no
spore-formingno96.647yes
glucose-fermentno90.35no
thermophileno98.557no
glucose-utilyes86.274yes

External links

@ref: 31025

culture collection no.: KACC 16440, JCM 18631

literature

  • topic: Phylogeny
  • Pubmed-ID: 23524354
  • title: Maribacter aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Maribacter.
  • authors: Lo N, Jin HM, Jeon CO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.050054-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31025Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172735528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/