Strain identifier

BacDive ID: 133993

Type strain: Yes

Species: Mongoliicoccus alkaliphilus

Strain Designation: JC165

Strain history: <- Ch Sasikala, JNT Univ., India

NCBI tax ID(s): 1237109 (species)

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General

@ref: 31019

BacDive-ID: 133993

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, coccus-shaped

description: Mongoliicoccus alkaliphilus JC165 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1237109
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch Sasikala, JNT Univ., India

doi: 10.13145/bacdive133993.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Mongoliicoccus
  • species: Mongoliicoccus alkaliphilus
  • full scientific name: Mongoliicoccus alkaliphilus Subhash et al. 2013

@ref: 31019

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Mongoliicoccus

species: Mongoliicoccus alkaliphilus

strain designation: JC165

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31019negative1.3 µm0.5 µmcoccus-shapedno
67771coccus-shapedno
67771negative

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31019positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31019positivegrowth08-12alkaliphile
31019positiveoptimum9.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31019aerobe
67771aerobe

halophily

  • @ref: 31019
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3101935391aspartate+carbon source
3101917057cellobiose+carbon source
3101916947citrate+carbon source
3101928757fructose+carbon source
3101933984fucose+carbon source
3101917234glucose+carbon source
3101929987glutamate+carbon source
3101917716lactose+carbon source
3101929864mannitol+carbon source
3101937684mannose+carbon source
3101915361pyruvate+carbon source
3101930911sorbitol+carbon source
3101917992sucrose+carbon source

enzymes

@refvalueactivityec
31019catalase+1.11.1.6
31019gelatinase+
31019cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
31019soil
67771From dry soil, solar salternKanjakumari, TamilnaduIndiaINDAsia8.0783377.5417

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_161506.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_505;96_12102;97_14674;98_106270;99_161506&stattab=map
  • Last taxonomy: Mongoliicoccus alkaliphilus subclade
  • 16S sequence: HE996970
  • Sequence Identity:
  • Total samples: 343
  • soil counts: 111
  • aquatic counts: 85
  • animal counts: 132
  • plant counts: 15

Sequence information

16S sequences

  • @ref: 31019
  • description: Mongoliicoccus alkaliphilus partial 16S rRNA gene, type strain JC165T
  • accession: HE996970
  • length: 1386
  • database: nuccore
  • NCBI tax ID: 1237109

GC content

@refGC-contentmethod
3101964.5
6777164.3high performance liquid chromatography (HPLC)

External links

@ref: 31019

culture collection no.: KCTC 32210, LMG 27255

straininfo link

  • @ref: 91660
  • straininfo: 382172

literature

  • topic: Phylogeny
  • Pubmed-ID: 23543498
  • title: Mongoliicoccus alkaliphilus sp. nov. and Litoribacter alkaliphilus sp. nov., isolated from salt pans.
  • authors: Subhash Y, Tushar L, Sasikala C, Ramana CV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.049924-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylcholines/analysis, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, *Soil Microbiology, Triterpenes/analysis, Xanthophylls/analysis, beta Carotene/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31019Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172734928776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91660Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID382172.1