Strain identifier

BacDive ID: 133985

Type strain: Yes

Species: Halopseudomonas formosensis

Strain Designation: CC-CY503

Strain history: C.-C. Young CC-CY503.

NCBI tax ID(s): 1002526 (species)

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General

@ref: 31000

BacDive-ID: 133985

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative, motile, rod-shaped

description: Halopseudomonas formosensis CC-CY503 is an anaerobe, Gram-negative, motile bacterium that was isolated from food product.

NCBI tax id

  • NCBI tax id: 1002526
  • Matching level: species

strain history

  • @ref: 67770
  • history: C.-C. Young CC-CY503.

doi: 10.13145/bacdive133985.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Halopseudomonas
  • species: Halopseudomonas formosensis
  • full scientific name: Halopseudomonas formosensis (Lin et al. 2013) Rudra and Gupta 2021

  • synonyms

    @refsynonym
    20215Neopseudomonas formosensis
    20215Pseudomonas formosensis

@ref: 31000

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas formosensis

strain designation: CC-CY503

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31000negative1.7 µm0.8 µmrod-shapedyes
69480yes94.53
69480negative99.992

pigmentation

  • @ref: 31000
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31000positivegrowth20-50
67770positivegrowth30mesophilic

culture pH

  • @ref: 31000
  • ability: positive
  • type: growth
  • pH: 6.0-10.0
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 31000
  • oxygen tolerance: anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

  • @ref: 31000
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

observation

  • @ref: 31000
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3100030089acetate+carbon source
3100017128adipate+carbon source
3100021217L-alaninamide+carbon source
3100016449alanine+carbon source
3100027689decanoate+carbon source
3100025115malate+carbon source
3100017272propionate+carbon source
3100051850methyl pyruvate+carbon source
3100030031succinate+carbon source
3100053423tween 40+carbon source
3100053426tween 80+carbon source

enzymes

@refvalueactivityec
31000acid phosphatase+3.1.3.2
31000alkaline phosphatase+3.1.3.1
31000catalase+1.11.1.6
31000cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31000food product
67770Food-waste compostTaiwanTWNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Food

Sequence information

16S sequences

  • @ref: 31000
  • description: Pseudomonas formosensis strain CC-CY503 16S ribosomal RNA gene, partial sequence
  • accession: JF432053
  • length: 1493
  • database: nuccore
  • NCBI tax ID: 1002526

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas formosensis strain JCM 184151002526.5wgspatric1002526
66792Pseudomonas formosensis JCM 184152663762775draftimg1002526
67770Halopseudomonas formosensis JCM 18415GCA_900115905scaffoldncbi1002526

GC content

  • @ref: 31000
  • GC-content: 63.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.932no
flagellatedyes68.559no
gram-positiveno98.686yes
anaerobicno96.297no
aerobicyes70.783yes
halophileno75.064no
spore-formingno94.373no
thermophileno99.586no
glucose-utilno83.981no
glucose-fermentno90.943no

External links

@ref: 31000

culture collection no.: BCRC 80437, JCM 18415

straininfo link

  • @ref: 91656
  • straininfo: 390759

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31000Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172733028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91656Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID390759.1