Strain identifier
BacDive ID: 133959
Type strain: 
Species: Defluviimonas aestuarii
Strain Designation: BS14
Strain history: C. O. Jeon BS14.
NCBI tax ID(s): 1130726 (species)
version 8.1 (current version)
General
@ref: 30953
BacDive-ID: 133959
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Defluviimonas aestuarii BS14 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from tidal flat.
NCBI tax id
- NCBI tax id: 1130726
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon BS14.
doi: 10.13145/bacdive133959.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Defluviimonas
- species: Defluviimonas aestuarii
- full scientific name: Defluviimonas aestuarii Math et al. 2013
@ref: 30953
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Defluviimonas
species: Defluviimonas aestuarii
strain designation: BS14
type strain: yes
Morphology
cell morphology
- @ref: 30953
- gram stain: negative
- cell length: 2.15 µm
- cell width: 0.65 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30953
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30953 | positive | growth | 05-40 | |
| 30953 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30953 | positive | growth | 6.5-9.5 | alkaliphile |
| 30953 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 30953
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30953 | NaCl | positive | growth | 0-10 % |
| 30953 | NaCl | positive | optimum | 1.25 % |
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30953 | 21217 | L-alaninamide | + | carbon source |
| 30953 | 28757 | fructose | + | carbon source |
| 30953 | 17234 | glucose | + | carbon source |
| 30953 | 17754 | glycerol | + | carbon source |
| 30953 | 17596 | inosine | + | carbon source |
| 30953 | 29864 | mannitol | + | carbon source |
| 30953 | 37684 | mannose | + | carbon source |
| 30953 | 37657 | methyl D-glucoside | + | carbon source |
| 30953 | 17822 | serine | + | carbon source |
| 30953 | 30031 | succinate | + | carbon source |
| 30953 | 26986 | threonine | + | carbon source |
| 30953 | 17748 | thymidine | + | carbon source |
| 30953 | 16704 | uridine | + | carbon source |
| 30953 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30953 | acid phosphatase | + | 3.1.3.2 |
| 30953 | alkaline phosphatase | + | 3.1.3.1 |
| 30953 | catalase | + | 1.11.1.6 |
| 30953 | cytochrome oxidase | + | 1.9.3.1 |
| 30953 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|
| 30953 | tidal flat | |||||
| 67770 | Surface tidal flat in the Boseong area (34° 38' 05.92" N 127° 02' 44.25" E) | Republic of Korea | KOR | Asia | 34.635 | 127.046 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Tidal flat
taxonmaps
- @ref: 69479
- File name: preview.99_14372.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_3803;97_5928;98_7429;99_14372&stattab=map
- Last taxonomy: Defluviimonas aestuarii
- 16S sequence: JN642270
- Sequence Identity:
- Total samples: 923
- soil counts: 54
- aquatic counts: 815
- animal counts: 51
- plant counts: 3
Sequence information
16S sequences
- @ref: 30953
- description: Defluviimonas aestuarii strain BS14 16S ribosomal RNA gene, partial sequence
- accession: JN642270
- length: 1352
- database: nuccore
- NCBI tax ID: 1130726
GC content
| @ref | GC-content | method |
|---|---|---|
| 30953 | 61.6 | |
| 67770 | 61.6 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 30953
culture collection no.: KACC 16442, JCM 18630
literature
- topic: Phylogeny
- Pubmed-ID: 23334880
- title: Defluviimonas aestuarii sp. nov., a marine bacterium isolated from a tidal flat, and emended description of the genus Defluviimonas Foesel et al. 2011.
- authors: Math RK, Jin HM, Jeong SH, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048389-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30953 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27283 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |