Strain identifier
BacDive ID: 133921
Type strain: 
Species: Naasia aerilata
Strain Designation: 5116S-4
NCBI tax ID(s): 1162966 (species)
version 8.1 (current version)
General
@ref: 30879
BacDive-ID: 133921
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, motile, rod-shaped
description: Naasia aerilata 5116S-4 is an aerobe, Gram-positive, motile bacterium that was isolated from air.
NCBI tax id
- NCBI tax id: 1162966
- Matching level: species
doi: 10.13145/bacdive133921.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Naasia
- species: Naasia aerilata
- full scientific name: Naasia aerilata Weon et al. 2013
@ref: 30879
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Microbacteriaceae
genus: Naasia
species: Naasia aerilata
strain designation: 5116S-4
type strain: yes
Morphology
cell morphology
- @ref: 30879
- gram stain: positive
- cell length: 2.8 µm
- cell width: 1.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30879
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30879 | positive | growth | 10-37 | |
| 30879 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30879 | positive | growth | 06-09 | alkaliphile |
| 30879 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30879
- oxygen tolerance: aerobe
spore formation
- @ref: 30879
- spore formation: no
halophily
- @ref: 30879
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 30879
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30879 | 16808 | 2-dehydro-D-gluconate | + | carbon source |
| 30879 | 33984 | fucose | + | carbon source |
| 30879 | 17234 | glucose | + | carbon source |
| 30879 | 28087 | glycogen | + | carbon source |
| 30879 | 24996 | lactate | + | carbon source |
| 30879 | 29864 | mannitol | + | carbon source |
| 30879 | 37684 | mannose | + | carbon source |
| 30879 | 33942 | ribose | + | carbon source |
| 30879 | 30911 | sorbitol | + | carbon source |
| 30879 | 17992 | sucrose | + | carbon source |
| 30879 | 4853 | esculin | + | hydrolysis |
| 30879 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30879 | acid phosphatase | + | 3.1.3.2 |
| 30879 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30879
- sample type: air
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
taxonmaps
- @ref: 69479
- File name: preview.99_100470.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3847;97_25905;98_32899;99_100470&stattab=map
- Last taxonomy: Amnibacterium
- 16S sequence: JQ639051
- Sequence Identity:
- Total samples: 1064
- soil counts: 905
- aquatic counts: 31
- animal counts: 82
- plant counts: 46
Sequence information
16S sequences
- @ref: 30879
- description: Naasia aerilata strain 5116S-4 16S ribosomal RNA gene, partial sequence
- accession: JQ639051
- length: 1463
- database: nuccore
- NCBI tax ID: 1162966
GC content
- @ref: 30879
- GC-content: 70
External links
@ref: 30879
culture collection no.: KACC 15517, NBRC 108725
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23203625 | Naasia aerilata gen. nov., sp. nov., a member of the family Microbacteriaceae isolated from air. | Weon HY, Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Suzuki KI, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.046599-0 | 2012 | Actinomycetales/*classification/genetics/isolation & purification, *Air Microbiology, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analysis | Genetics |
| Phylogeny | 31738159 | Naasia lichenicola sp. nov., an actinobacterium isolated from lichen. | Jiang LQ, Zhang K, Li GD, Wang XY, Shi SB, Li QY, An DF, Lang L, Wang LS, Jiang CL, Jiang Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003865 | 2020 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Lichens/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30879 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27209 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |