Strain identifier
BacDive ID: 133899
Type strain: 
Species: Aureicoccus marinus
Strain Designation: SG-18
NCBI tax ID(s): 754435 (species)
version 8.1 (current version)
General
@ref: 30814
BacDive-ID: 133899
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, coccus-shaped
description: Aureicoccus marinus SG-18 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 754435
- Matching level: species
doi: 10.13145/bacdive133899.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aureicoccus
- species: Aureicoccus marinus
- full scientific name: Aureicoccus marinus Park et al. 2013
@ref: 30814
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aureicoccus
species: Aureicoccus marinus
strain designation: SG-18
type strain: yes
Morphology
cell morphology
- @ref: 30814
- gram stain: negative
- cell length: 2 µm
- cell width: 2 µm
- cell shape: coccus-shaped
- motility: yes
pigmentation
- @ref: 30814
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30814 | positive | growth | 15-37 | |
| 30814 | positive | optimum | 27.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30814 | positive | growth | 06-09 | alkaliphile |
| 30814 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30814
- oxygen tolerance: aerobe
spore formation
- @ref: 30814
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30814 | NaCl | positive | growth | 01-05 % |
| 30814 | NaCl | positive | optimum | 2 % |
observation
- @ref: 30814
- observation: aggregates in clumps
metabolite utilization
- @ref: 30814
- Chebi-ID: 4853
- metabolite: esculin
- utilization activity: +
- kind of utilization tested: hydrolysis
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30814 | acid phosphatase | + | 3.1.3.2 |
| 30814 | alkaline phosphatase | + | 3.1.3.1 |
| 30814 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30814
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_29309.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_14418;97_17589;98_21859;99_29309&stattab=map
- Last taxonomy: Aureicoccus marinus subclade
- 16S sequence: AB557547
- Sequence Identity:
- Total samples: 5907
- soil counts: 254
- aquatic counts: 5380
- animal counts: 235
- plant counts: 38
Sequence information
16S sequences
- @ref: 30814
- description: Aureicoccus marinus gene for 16S rRNA, partial sequence, strain: SG-18
- accession: AB557547
- length: 1477
- database: nuccore
- NCBI tax ID: 754435
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aureicoccus marinus SG-18 | GCA_002954325 | scaffold | ncbi | 754435 |
| 66792 | Aureicoccus marinus SG-18 | 2886768321 | draft | img | 754435 |
GC content
- @ref: 30814
- GC-content: 47
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.614 | no |
| gram-positive | no | 97.873 | yes |
| anaerobic | no | 99.442 | no |
| aerobic | yes | 89.34 | no |
| halophile | no | 59.568 | no |
| spore-forming | no | 96.787 | yes |
| glucose-util | yes | 88.807 | no |
| thermophile | no | 96.597 | yes |
| motile | no | 88.016 | yes |
| glucose-ferment | no | 89.212 | no |
External links
@ref: 30814
culture collection no.: NBRC 108814, KCTC 23967
literature
- topic: Phylogeny
- Pubmed-ID: 23002047
- title: Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater.
- authors: Park S, Yoshizawa S, Muramatsu Y, Nakagawa Y, Yokota A, Kogure K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.045104-0
- year: 2012
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Heterotrophic Processes, Japan, Molecular Sequence Data, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30814 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27145 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |