Strain identifier
BacDive ID: 133864
Type strain: 
Species: Microbulbifer gwangyangensis
Strain Designation: GY2
Strain history: C. O. Jeon GY2.
NCBI tax ID(s): 1028749 (species)
version 8.1 (current version)
General
@ref: 30706
BacDive-ID: 133864
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Microbulbifer gwangyangensis GY2 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1028749
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon GY2.
doi: 10.13145/bacdive133864.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Microbulbiferaceae
- genus: Microbulbifer
- species: Microbulbifer gwangyangensis
- full scientific name: Microbulbifer gwangyangensis Jeong et al. 2013
@ref: 30706
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Cellvibrionales
family: Microbulbiferaceae
genus: Microbulbifer
species: Microbulbifer gwangyangensis
strain designation: GY2
type strain: yes
Morphology
cell morphology
- @ref: 30706
- gram stain: negative
- cell length: 3.25 µm
- cell width: 0.35 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30706
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30706 | positive | growth | 10-40 | |
| 30706 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30706 | positive | growth | 5.5-9 | alkaliphile |
| 30706 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 30706
- oxygen tolerance: aerobe
spore formation
- @ref: 30706
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30706 | NaCl | positive | growth | 0-9 % |
| 30706 | NaCl | positive | optimum | 1.5 % |
observation
| @ref | observation |
|---|---|
| 30706 | aggregates in clumps |
| 67770 | quinones: Q-8 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30706 | 17234 | glucose | + | carbon source |
| 30706 | 17306 | maltose | + | carbon source |
| 30706 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30706 | acid phosphatase | + | 3.1.3.2 |
| 30706 | alkaline phosphatase | + | 3.1.3.1 |
| 30706 | alpha-galactosidase | + | 3.2.1.22 |
| 30706 | catalase | + | 1.11.1.6 |
| 30706 | gelatinase | + | |
| 30706 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 30706 | marine sediment | |||
| 67770 | Sediment of a tidal flat of the Gwangyang Bay | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 30706
- description: Microbulbifer gwangyangensis strain GY2 16S ribosomal RNA gene, partial sequence
- accession: JF751045
- length: 1497
- database: nuccore
- NCBI tax ID: 1028749
GC content
| @ref | GC-content | method |
|---|---|---|
| 30706 | 55.1 | |
| 67770 | 55.1 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 30706
culture collection no.: KACC 16189, JCM 17800
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22798656 | Microbulbifer gwangyangensis sp. nov. and Microbulbifer pacificus sp. nov., isolated from marine environments. | Jeong SH, Yang SH, Jin HM, Kim JM, Kwon KK, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijs.0.042606-0 | 2012 | Alteromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bays/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysis, Water Microbiology | Genetics |
| Phylogeny | 26869238 | Microbulbifer rhizosphaerae sp. nov., isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum. | Camacho M, Del Carmen Montero-Calasanz M, Redondo-Gomez S, Rodriguez-Llorente I, Schumann P, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000955 | 2016 | Alteromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Spain, Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30706 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27037 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |