Strain identifier

BacDive ID: 133842

Type strain: Yes

Species: Flavobacterium tilapiae

Strain Designation: Ruye-71

Strain history: <- WM Chen, Nat Kaohsiung Marine Uinv., Taiwan

NCBI tax ID(s): 875042 (species)

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General

@ref: 30652

BacDive-ID: 133842

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Flavobacterium tilapiae Ruye-71 is an aerobe, Gram-negative, motile bacterium that was isolated from freshwater .

NCBI tax id

  • NCBI tax id: 875042
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- WM Chen, Nat Kaohsiung Marine Uinv., Taiwan

doi: 10.13145/bacdive133842.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium tilapiae
  • full scientific name: Flavobacterium tilapiae Chen et al. 2013

@ref: 30652

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium tilapiae

strain designation: Ruye-71

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
30652negative4.9 µm0.45 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative

pigmentation

  • @ref: 30652
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30652positivegrowth10-30
30652positiveoptimum22.5psychrophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
30652positivegrowth07-08
30652positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30652aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
30652NaClpositivegrowth0-2 %
30652NaClpositiveoptimum0.5 %

observation

@refobservation
30652aggregates in clumps
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3065230089acetate+carbon source
3065240585alpha-cyclodextrin+carbon source
3065222599arabinose+carbon source
3065222653asparagine+carbon source
3065235391aspartate+carbon source
3065217057cellobiose+carbon source
3065223652dextrin+carbon source
3065228757fructose+carbon source
3065228260galactose+carbon source
3065217234glucose+carbon source
3065229987glutamate+carbon source
3065228087glycogen+carbon source
3065217306maltose+carbon source
3065237684mannose+carbon source
3065237657methyl D-glucoside+carbon source
30652506227N-acetylglucosamine+carbon source
3065218257ornithine+carbon source
3065226271proline+carbon source
3065226986threonine+carbon source
3065227082trehalose+carbon source
3065253423tween 40+carbon source
3065253426tween 80+carbon source
306524853esculin+hydrolysis

enzymes

@refvalueactivityec
30652acid phosphatase+3.1.3.2
30652alkaline phosphatase+3.1.3.1
30652catalase+1.11.1.6
30652gelatinase+
30652cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30652freshwater (river, lake, pond)
67771From freshwater pond for culturing tilapiine cichlid fish `Tilapia rendalli`the vicinity of Taitung city, eastern TaiwanTaiwanTWNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 30652
  • description: Flavobacterium tilapiae strain Ruye-71 16S ribosomal RNA gene, partial sequence
  • accession: HQ111525
  • length: 1407
  • database: nuccore
  • NCBI tax ID: 875042

GC content

  • @ref: 30652
  • GC-content: 39.2

External links

@ref: 30652

culture collection no.: BCRC 80262, KCTC 23312

literature

  • topic: Phylogeny
  • Pubmed-ID: 22611198
  • title: Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae.
  • authors: Chen WM, Huang WC, Young CC, Sheu SY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.041178-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polyamines/analysis, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30652Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172698328776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc