Strain identifier

BacDive ID: 133836

Type strain: Yes

Species: Kangiella sediminilitoris

Strain Designation: BB-Mw22

Strain history: <- JH Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1144748 (species)

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General

@ref: 30632

BacDive-ID: 133836

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative, rod-shaped

description: Kangiella sediminilitoris BB-Mw22 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from tidal flat.

NCBI tax id

  • NCBI tax id: 1144748
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, Sungkyunkwan Univ.

doi: 10.13145/bacdive133836.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Kangiellaceae
  • genus: Kangiella
  • species: Kangiella sediminilitoris
  • full scientific name: Kangiella sediminilitoris Lee et al. 2013

@ref: 30632

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Kangiellaceae

genus: Kangiella

species: Kangiella sediminilitoris

strain designation: BB-Mw22

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30632negative3 µm0.65 µmrod-shapedno
67771negative
69480negative99.995

colony morphology

  • @ref: 62802
  • incubation period: 2 days

pigmentation

  • @ref: 30632
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30632positivegrowth10-40
30632positiveoptimum33.5mesophilic
62802positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
30632positivegrowth5-7.5
30632positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30632anaerobe
62802aerobe
67771aerobe

spore formation

@refspore formationconfidence
30632no
69481no100
69480no99.999

halophily

  • @ref: 30632
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3063222599arabinose+carbon source
3063217057cellobiose+carbon source
3063228757fructose+carbon source
3063228260galactose+carbon source
3063217234glucose+carbon source
3063217716lactose+carbon source
3063217306maltose+carbon source
3063229864mannitol+carbon source
3063237684mannose+carbon source
3063228053melibiose+carbon source
3063217268myo-inositol+carbon source
3063216634raffinose+carbon source
3063226546rhamnose+carbon source
3063233942ribose+carbon source
3063230911sorbitol+carbon source
3063217992sucrose+carbon source
3063227082trehalose+carbon source
3063218222xylose+carbon source
3063217632nitrate+reduction

enzymes

@refvalueactivityec
30632alkaline phosphatase+3.1.3.1
30632catalase+1.11.1.6
30632cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30632tidal flat
62802Tidal flat sediment2009South Sea,BoseongRepublic of KoreaKORAsia
67771From sea waterSouth SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_7778.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15954;96_2042;97_3722;98_4721;99_7778&stattab=map
  • Last taxonomy: Kangiella sediminilitoris
  • 16S sequence: JQ317935
  • Sequence Identity:
  • Total samples: 91
  • soil counts: 3
  • aquatic counts: 84
  • animal counts: 4

Sequence information

16S sequences

  • @ref: 30632
  • description: Kangiella sediminilitoris strain BB-Mw22 16S ribosomal RNA gene, partial sequence
  • accession: JQ317935
  • length: 1459
  • database: nuccore
  • NCBI tax ID: 1144748

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kangiella sediminilitoris KCTC 23892GCA_001708405completencbi1144748
66792Kangiella sediminilitoris strain KCTC 238921144748.3completepatric1144748
66792Kangiella sediminilitoris KCTC 238922751185718completeimg1144748

GC content

  • @ref: 30632
  • GC-content: 48.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno92.767no
gram-positiveno99.051no
anaerobicno98.372no
halophileno70.066no
spore-formingno96.22yes
glucose-utilyes84.449yes
aerobicyes81.657no
thermophileno96.885yes
motileno85.149no
glucose-fermentno84.322no

External links

@ref: 30632

culture collection no.: KCTC 23892, CCUG 62217

straininfo link

  • @ref: 91613
  • straininfo: 408453

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22685109Kangiella sediminilitoris sp. nov., isolated from a tidal flat sediment.Lee SY, Park S, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.040691-02012Alcanivoraceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny34743249Kangiella shandongensis sp. nov., a novel species isolated from saltern in Yantai, China.Peng LY, Yin R, Gao SK, Jiang HN, Liu XX, Ma Y, Zhou YXAntonie Van Leeuwenhoek10.1007/s10482-021-01682-92021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Phylogeny, *RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30632Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172696328776041
62802Curators of the CCUGhttps://www.ccug.se/strain?id=62217Culture Collection University of Gothenburg (CCUG) (CCUG 62217)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91613Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408453.1