Strain identifier

BacDive ID: 133817

Type strain: Yes

Species: Algoriphagus chungangensis

Strain history: <- WY Kim, Chung-Ang Univ.

NCBI tax ID(s): 1134595 (species)

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General

@ref: 30582

BacDive-ID: 133817

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Algoriphagus chungangensis KCTC 23759 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1134595
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- WY Kim, Chung-Ang Univ.

doi: 10.13145/bacdive133817.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus chungangensis
  • full scientific name: Algoriphagus chungangensis Kang et al. 2013

@ref: 30582

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus chungangensis

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30582negative1.6 µm0.5 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 62726
  • incubation period: 2 days

pigmentation

  • @ref: 30582
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30582positivegrowth10-45
30582positiveoptimum30mesophilic
62726positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30582positivegrowth4.5-10alkaliphile
30582positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30582aerobe
62726aerobe
67771aerobe

spore formation

  • @ref: 30582
  • spore formation: no

halophily

  • @ref: 30582
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-15 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3058230089acetate+carbon source
3058222599arabinose+carbon source
3058217057cellobiose+carbon source
3058228757fructose+carbon source
3058217234glucose+carbon source
3058229987glutamate+carbon source
3058217716lactose+carbon source
3058237684mannose+carbon source
3058228053melibiose+carbon source
3058237657methyl D-glucoside+carbon source
3058218257ornithine+carbon source
3058226271proline+carbon source
3058217148putrescine+carbon source
3058216634raffinose+carbon source
3058230031succinate+carbon source
3058226986threonine+carbon source
3058227082trehalose+carbon source
3058217632nitrate+reduction

enzymes

@refvalueactivityec
30582alkaline phosphatase+3.1.3.1
30582catalase+1.11.1.6
30582gelatinase+
30582cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitude
30582marine sediment
62726Tidal flat2010-10-18Sido IslandRepublic of KoreaKORAsia
67771From tidal flat sedimentSido Island in the Yellow SeaRepublic of KoreaKORAsia37.537126.419

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 30582
  • description: Algoriphagus chungangensis strain CAU 1002 16S ribosomal RNA gene, partial sequence
  • accession: JN967625
  • length: 1430
  • database: nuccore
  • NCBI tax ID: 1134595

GC content

@refGC-content
3058238
6777138.0

External links

@ref: 30582

culture collection no.: KCTC 23759, CCUG 61890, CAU 1002

straininfo link

  • @ref: 91604
  • straininfo: 408420

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22544791Algoriphagus chungangensis sp. nov., isolated from a tidal flat sediment.Kang H, Weerawongwiwat V, Jung MY, Myung SC, Kim WInt J Syst Evol Microbiol10.1099/ijs.0.039214-02012Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, Carbohydrates/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny27707431Algoriphagus litorisediminis sp. nov., isolated from a tidal flat.Park S, Ha MJ, Yoon SY, Jung YT, Yoon JHInt J Syst Evol Microbiol10.1099/ijsem.0.0015382016Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phosphatidylcholines/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30582Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172691328776041
62726Curators of the CCUGhttps://www.ccug.se/strain?id=61890Culture Collection University of Gothenburg (CCUG) (CCUG 61890)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
91604Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408420.1