Strain identifier

BacDive ID: 133813

Type strain: Yes

Species: Haloferula chungangensis

Strain Designation: JE 22-4M

Strain history: <- WY Kim, Chung-Ang Univ.

NCBI tax ID(s): 1048331 (species)

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General

@ref: 30571

BacDive-ID: 133813

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Haloferula chungangensis JE 22-4M is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1048331
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- WY Kim, Chung-Ang Univ.

doi: 10.13145/bacdive133813.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/verrucomicrobiota
  • domain: Bacteria
  • phylum: Verrucomicrobiota
  • class: Verrucomicrobiia
  • order: Verrucomicrobiales
  • family: Verrucomicrobiaceae
  • genus: Haloferula
  • species: Haloferula chungangensis
  • full scientific name: Haloferula chungangensis Kang et al. 2013

@ref: 30571

domain: Bacteria

phylum: Verrucomicrobia

class: Verrucomicrobiae

order: Verrucomicrobiales

family: Verrucomicrobiaceae

genus: Haloferula

species: Haloferula chungangensis

strain designation: JE 22-4M

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30571negative1.6 µm0.5 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 62740
  • incubation period: 2-3 days

pigmentation

  • @ref: 30571
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30571positivegrowth04-37
30571positiveoptimum30mesophilic
62740positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30571positivegrowth6.5-9.5alkaliphile
30571positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30571aerobe
62740aerobe
67771aerobe

spore formation

  • @ref: 30571
  • spore formation: no

halophily

  • @ref: 30571
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-15 %

observation

@refobservation
30571aggregates in chains
67771quinones: MK-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3057122599arabinose+carbon source
3057123652dextrin+carbon source
3057128757fructose+carbon source
3057128260galactose+carbon source
3057124175galacturonate+carbon source
3057117234glucose+carbon source
3057117754glycerol+carbon source
3057117716lactose+carbon source
3057117306maltose+carbon source
3057129864mannitol+carbon source
3057137684mannose+carbon source
3057128053melibiose+carbon source
3057151850methyl pyruvate+carbon source
3057130031succinate+carbon source
3057117992sucrose+carbon source
3057127082trehalose+carbon source
3057116199urea+carbon source
3057117632nitrate+reduction

enzymes

@refvalueactivityec
30571alkaline phosphatase+3.1.3.1
30571catalase+1.11.1.6
30571cytochrome oxidase+1.9.3.1
30571urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30571marine sediment
62740Sea Soil2010-06-10Jeju IslandRepublic of KoreaKORAsia
67771From marine sedimentJejuRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_10466.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_545;96_5176;97_6248;98_7798;99_10466&stattab=map
  • Last taxonomy: Haloferula chungangensis subclade
  • 16S sequence: JN001489
  • Sequence Identity:
  • Total samples: 2051
  • soil counts: 114
  • aquatic counts: 1850
  • animal counts: 81
  • plant counts: 6

Sequence information

16S sequences

  • @ref: 30571
  • description: Haloferula chungangensis strain CAU 1074 16S ribosomal RNA gene, partial sequence
  • accession: JN001489
  • length: 1467
  • database: nuccore
  • NCBI tax ID: 1048331

GC content

@refGC-content
3057164
6777164.0

External links

@ref: 30571

culture collection no.: KCTC 23578, CCUG 61920, CAU 1074

straininfo link

  • @ref: 91601
  • straininfo: 408938

literature

  • topic: Phylogeny
  • Pubmed-ID: 22307510
  • title: Haloferula chungangensis sp. nov., isolated from marine sediment.
  • authors: Kang H, Traiwan J, Weerawongwiwat V, Jung MY, Jeong JH, Myung SC, Lee KC, Lee JS, Kim W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.039016-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Gram-Negative Facultatively Anaerobic Rods/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30571Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172690228776041
62740Curators of the CCUGhttps://www.ccug.se/strain?id=61920Culture Collection University of Gothenburg (CCUG) (CCUG 61920)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91601Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408938.1