Strain identifier
BacDive ID: 13381
Type strain: 
Species: Pseudonocardia sp.
Strain history: <- S.-T. Lee; Gsoil 857 <- W.-T. Im
NCBI tax ID(s): 60912 (species)
version 9 (current version)
General
@ref: 12306
BacDive-ID: 13381
DSM-Number: 45061
keywords: 16S sequence, Bacteria
description: Pseudonocardia sp. DSM 45061 is a bacterium that was isolated from soil of a ginseng field.
NCBI tax id
- NCBI tax id: 60912
- Matching level: species
strain history
- @ref: 12306
- history: <- S.-T. Lee; Gsoil 857 <- W.-T. Im
doi: 10.13145/bacdive13381.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia sp.
- full scientific name: Pseudonocardia Henssen 1957 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinobispora 20215 Amycolata 20215 Pseudoamycolata
@ref: 12306
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia sp.
full scientific name: Pseudonocardia sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 12306
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 12306
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 12306
- sample type: soil of a ginseng field
- geographic location: Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_42203.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_13737;97_16724;98_30670;99_42203&stattab=map
- Last taxonomy: Actinophytocola
- 16S sequence: AB271054
- Sequence Identity:
- Total samples: 45
- soil counts: 39
- aquatic counts: 1
- animal counts: 1
- plant counts: 4
Sequence information
16S sequences
- @ref: 12306
- description: Pseudonocardiaceae bacterium Gsoil 857 gene for 16S rRNA, partial sequence
- accession: AB271054
- length: 1442
- database: nuccore
- NCBI tax ID: 400764
External links
@ref: 12306
culture collection no.: DSM 45061, Gsoil 857
straininfo link
- @ref: 82578
- straininfo: 297514
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12306 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45061) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45061 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82578 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297514.1 | StrainInfo: A central database for resolving microbial strain identifiers |