Strain identifier
BacDive ID: 133796
Type strain: 
Species: Parerythrobacter jejuensis
Strain history: D.-H. Lee CNU001.
NCBI tax ID(s): 795812 (species)
version 8.1 (current version)
General
@ref: 30540
BacDive-ID: 133796
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Parerythrobacter jejuensis KCTC 23090 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 795812
- Matching level: species
strain history
- @ref: 67770
- history: D.-H. Lee CNU001.
doi: 10.13145/bacdive133796.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Parerythrobacter
- species: Parerythrobacter jejuensis
- full scientific name: Parerythrobacter jejuensis (Yoon et al. 2013) Xu et al. 2020
synonyms
- @ref: 20215
- synonym: Erythrobacter jejuensis
@ref: 30540
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Erythrobacter
species: Erythrobacter jejuensis
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30540 | negative | 7.5 µm | 0.25 µm | rod-shaped | no | |
| 69480 | negative | 99.968 |
pigmentation
- @ref: 30540
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30540 | positive | growth | 15-37 | |
| 30540 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30540 | positive | growth | 06-10 | alkaliphile |
| 30540 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30540
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.995 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30540 | NaCl | positive | growth | 01-05 % |
| 30540 | NaCl | positive | optimum | 3 % |
observation
| @ref | observation |
|---|---|
| 30540 | aggregates in clumps |
| 67770 | quinones: Q-10 |
metabolite utilization
- @ref: 30540
- Chebi-ID: 4853
- metabolite: esculin
- utilization activity: +
- kind of utilization tested: hydrolysis
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30540 | acid phosphatase | + | 3.1.3.2 |
| 30540 | alkaline phosphatase | + | 3.1.3.1 |
| 30540 | alpha-galactosidase | + | 3.2.1.22 |
| 30540 | catalase | + | 1.11.1.6 |
| 30540 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 30540 | seawater | |||
| 67770 | Seawater on the coast of Jeju Island | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Sequence information
16S sequences
- @ref: 30540
- description: Erythrobacter jejuensis strain CNU001 16S ribosomal RNA gene, partial sequence
- accession: DQ453142
- length: 1480
- database: nuccore
- NCBI tax ID: 795812
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Erythrobacter jejuensis strain JCM 16677 | 795812.3 | wgs | patric | 795812 |
| 67770 | Parerythrobacter jejuensis JCM 16677 | GCA_009827995 | contig | ncbi | 795812 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 30540 | 58.9 | |
| 67770 | 58.9 | thermal denaturation, midpoint method (Tm) |
| 67770 | 60.2 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 57.069 | yes |
| flagellated | no | 88.363 | yes |
| gram-positive | no | 97.895 | yes |
| anaerobic | no | 99.348 | yes |
| halophile | no | 77.473 | no |
| spore-forming | no | 95.218 | no |
| thermophile | no | 96.249 | no |
| glucose-util | yes | 79.943 | no |
| aerobic | yes | 94.949 | yes |
| glucose-ferment | no | 92.199 | no |
External links
@ref: 30540
culture collection no.: KCTC 23090, JCM 16677, CNU 001
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30540 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26871 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |