Strain identifier
BacDive ID: 133762
Type strain: 
Species: Exiguobacterium aquaticum
Strain Designation: IMTB-3094
Strain history: S. Mayilraj IMTB-3094.
NCBI tax ID(s): 1038855 (species)
version 8.1 (current version)
General
@ref: 30426
BacDive-ID: 133762
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-positive, motile, rod-shaped
description: Exiguobacterium aquaticum IMTB-3094 is a facultative anaerobe, Gram-positive, motile bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 1038855
- Matching level: species
strain history
- @ref: 67770
- history: S. Mayilraj IMTB-3094.
doi: 10.13145/bacdive133762.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Exiguobacterium
- species: Exiguobacterium aquaticum
- full scientific name: Exiguobacterium aquaticum Raichand et al. 2012
@ref: 30426
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Caryophanales, not assigned to family
genus: Exiguobacterium
species: Exiguobacterium aquaticum
strain designation: IMTB-3094
type strain: yes
Morphology
cell morphology
- @ref: 30426
- gram stain: positive
- cell length: 2.5 µm
- cell width: 0.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30426
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30426 | positive | growth | 15-42 | |
| 30426 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30426
- ability: positive
- type: optimum
- pH: 8
Physiology and metabolism
oxygen tolerance
- @ref: 30426
- oxygen tolerance: facultative anaerobe
halophily
- @ref: 30426
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <10 %
observation
- @ref: 67770
- observation: quinones: MK-7, MK-6, MK-8
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30426 | 28757 | fructose | + | carbon source |
| 30426 | 29864 | mannitol | + | carbon source |
| 30426 | 30911 | sorbitol | + | carbon source |
| 30426 | 17992 | sucrose | + | carbon source |
| 30426 | 27082 | trehalose | + | carbon source |
| 30426 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30426 | catalase | + | 1.11.1.6 |
| 30426 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 30426 | freshwater (river, lake, pond) | ||||
| 67770 | Water sample collected from Tikkar Tal Lake | Haryana | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #River (Creek) |
taxonmaps
- @ref: 69479
- File name: preview.99_3158.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_130;96_715;97_837;98_2422;99_3158&stattab=map
- Last taxonomy: Exiguobacterium
- 16S sequence: JF775503
- Sequence Identity:
- Total samples: 6561
- soil counts: 574
- aquatic counts: 2262
- animal counts: 3194
- plant counts: 531
Sequence information
16S sequences
- @ref: 30426
- description: Exiguobacterium aquaticum strain IMTB-3094 16S ribosomal RNA gene, partial sequence
- accession: JF775503
- length: 1480
- database: nuccore
- NCBI tax ID: 1038855
Genome sequences
- @ref: 66792
- description: Exiguobacterium aquaticum IMTB_3094
- accession: GCA_025234795
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1038855
GC content
| @ref | GC-content | method |
|---|---|---|
| 30426 | 53.2 | |
| 67770 | 53.2 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.318 | no |
| flagellated | yes | 72.712 | no |
| gram-positive | yes | 86.653 | yes |
| anaerobic | no | 98.811 | yes |
| aerobic | yes | 58.485 | yes |
| halophile | yes | 78.199 | yes |
| spore-forming | no | 63.257 | no |
| glucose-ferment | no | 80.179 | no |
| thermophile | no | 99.712 | yes |
| glucose-util | yes | 89.649 | no |
External links
@ref: 30426
culture collection no.: MTCC 10958, JCM 17977
literature
- topic: Phylogeny
- Pubmed-ID: 22058319
- title: Exiguobacterium aquaticum sp. nov., a member of the genus Exiguobacterium.
- authors: Raichand R, Pareek S, Singh NK, Mayilraj S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.035790-0
- year: 2011
- mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Gram-Positive Rods/*classification/genetics/isolation & purification, India, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30426 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26762 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |