Strain identifier
BacDive ID: 133761
Type strain: 
Species: Marinobacter antarcticus
Strain Designation: ZS2-30
NCBI tax ID(s): 564117 (species)
version 8.1 (current version)
General
@ref: 30424
BacDive-ID: 133761
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Marinobacter antarcticus ZS2-30 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 564117
- Matching level: species
doi: 10.13145/bacdive133761.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter antarcticus
- full scientific name: Marinobacter antarcticus Liu et al. 2012
@ref: 30424
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter antarcticus
strain designation: ZS2-30
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30424 | negative | 1.9 µm | 0.65 µm | rod-shaped | yes | |
| 69480 | yes | 97.649 | ||||
| 69480 | negative | 99.998 |
pigmentation
- @ref: 30424
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30424 | positive | growth | 04-35 | |
| 30424 | positive | optimum | 25 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30424 | positive | growth | 5-10.5 | alkaliphile |
| 30424 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30424
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.989 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30424 | NaCl | positive | growth | 0-25 % |
| 30424 | NaCl | positive | optimum | 3.50 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30424 | 16449 | alanine | + | carbon source |
| 30424 | 24996 | lactate | + | carbon source |
| 30424 | 17822 | serine | + | carbon source |
| 30424 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30424 | acid phosphatase | + | 3.1.3.2 |
| 30424 | alkaline phosphatase | + | 3.1.3.1 |
| 30424 | catalase | + | 1.11.1.6 |
| 30424 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30424
- sample type: marine sediment
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 30424
- description: Marinobacter antarcticus strain ZS2-30 16S ribosomal RNA gene, partial sequence
- accession: FJ196022
- length: 1506
- database: nuccore
- NCBI tax ID: 564117
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter antarcticus CGMCC 1.10835 | GCA_900142385 | contig | ncbi | 564117 |
| 66792 | Marinobacter antarcticus strain CGMCC 1.10835 | 564117.3 | wgs | patric | 564117 |
| 66792 | Marinobacter antarcticus CGMCC 1.10835 | 2667527391 | draft | img | 564117 |
GC content
- @ref: 30424
- GC-content: 55.8
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 99.046 | yes |
| anaerobic | no | 96.593 | yes |
| halophile | yes | 94.172 | no |
| spore-forming | no | 96.244 | no |
| glucose-util | no | 61.298 | no |
| thermophile | no | 98.193 | yes |
| flagellated | yes | 80.077 | no |
| motile | yes | 90.435 | yes |
| aerobic | yes | 78.203 | no |
| glucose-ferment | no | 87.239 | no |
External links
@ref: 30424
culture collection no.: CGMCC 1.10835, KCTC 23684
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21984673 | Marinobacter antarcticus sp. nov., a halotolerant bacterium isolated from Antarctic intertidal sandy sediment. | Liu C, Chen CX, Zhang XY, Yu Y, Liu A, Li GW, Chen XL, Chen B, Zhou BC, Zhang YZ | Int J Syst Evol Microbiol | 10.1099/ijs.0.035774-0 | 2011 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 26518711 | Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment. | Cui Z, Gao W, Xu G, Luan X, Li Q, Yin X, Huang D, Zheng L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000722 | 2015 | Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30424 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26760 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |