Strain identifier
BacDive ID: 133755
Type strain: 
Species: Caenispirillum salinarum
Strain Designation: AK4
Strain history: P. Anil Kumar AK4.
NCBI tax ID(s): 1238182 (strain), 859058 (species)
version 8.1 (current version)
General
@ref: 30406
BacDive-ID: 133755
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, ovoid-shaped
description: Caenispirillum salinarum AK4 is a mesophilic, Gram-negative, motile bacterium that was isolated from Solar saltern.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 859058 | species |
| 1238182 | strain |
strain history
- @ref: 67770
- history: P. Anil Kumar AK4.
doi: 10.13145/bacdive133755.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Caenispirillum
- species: Caenispirillum salinarum
- full scientific name: Caenispirillum salinarum Ritika et al. 2012
@ref: 30406
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Caenispirillum
species: Caenispirillum salinarum
strain designation: AK4
type strain: yes
Morphology
cell morphology
- @ref: 30406
- gram stain: negative
- cell length: 4 µm
- cell width: 1 µm
- cell shape: ovoid-shaped
- motility: yes
pigmentation
- @ref: 30406
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30406 | positive | growth | 30-35 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30406
- ability: positive
- type: optimum
- pH: 7.5
Physiology and metabolism
spore formation
- @ref: 30406
- spore formation: no
halophily
- @ref: 30406
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 3 %
observation
- @ref: 67770
- observation: quinones: Q-10, Q-11
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30406 | cytochrome oxidase | + | 1.9.3.1 |
| 30406 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 30406 | Solar saltern | ||||
| 67770 | Sediment sample collected from a solar saltern at Kakinada | Andhra Pradesh | India | IND | Asia |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_7515.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_292;96_3508;97_4302;98_5507;99_7515&stattab=map
- Last taxonomy: Caenispirillum
- 16S sequence: FN995238
- Sequence Identity:
- Total samples: 1664
- soil counts: 522
- aquatic counts: 936
- animal counts: 76
- plant counts: 130
Sequence information
16S sequences
- @ref: 30406
- description: Caenispirillum salinarum AK4 partial 16S rRNA gene
- accession: FN995238
- length: 1426
- database: nuccore
- NCBI tax ID: 1238182
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caenispirillum salinarum AK4 | GCA_000315795 | contig | ncbi | 1238182 |
| 66792 | Caenispirillum salinarum AK4 | 1238182.3 | wgs | patric | 1238182 |
| 66792 | Caenispirillum salinarum AK4 | 2519899571 | draft | img | 1238182 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 30406 | 71 | |
| 67770 | 71 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 93.259 | no |
| gram-positive | no | 99.016 | yes |
| anaerobic | no | 86.369 | no |
| aerobic | no | 62.427 | no |
| halophile | no | 62.772 | no |
| spore-forming | no | 88.397 | no |
| thermophile | no | 98.309 | yes |
| glucose-util | yes | 82.64 | no |
| flagellated | yes | 79.428 | no |
| glucose-ferment | no | 90.626 | no |
External links
@ref: 30406
culture collection no.: MTCC 10963, JCM 17360
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21908680 | Caenispirillum salinarum sp. nov., a member of the family Rhodospirillaceae isolated from a solar saltern. | Ritika C, Suresh K, Anil Kumar P | Int J Syst Evol Microbiol | 10.1099/ijs.0.035287-0 | 2011 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enzymes/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, India, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA | Enzymology |
| Phylogeny | 29170803 | Caenispirillum humi sp. nov., a bacterium isolated from the soil of Korean pine garden. | Huq MA | Arch Microbiol | 10.1007/s00203-017-1449-z | 2017 | Bacterial Typing Techniques, Base Composition/genetics, Catalase/metabolism, DNA, Bacterial/genetics, Fatty Acids/analysis, Gardens, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhodospirillaceae/classification/genetics/isolation & purification, Sequence Analysis, DNA, Soil, Soil Microbiology, Ubiquinone/metabolism | Metabolism |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30406 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26743 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |