Strain identifier

BacDive ID: 133731

Type strain: Yes

Species: Salinimicrobium gaetbulicola

Strain Designation: BB-My20

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 999702 (species)

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General

@ref: 30322

BacDive-ID: 133731

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Salinimicrobium gaetbulicola BB-My20 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 999702
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive133731.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Salinimicrobium
  • species: Salinimicrobium gaetbulicola
  • full scientific name: Salinimicrobium gaetbulicola Lee et al. 2012

@ref: 30322

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Salinimicrobium

species: Salinimicrobium gaetbulicola

strain designation: BB-My20

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30322negative3 µm0.5 µmrod-shapedno
67771negative

colony morphology

  • @ref: 62487
  • incubation period: 2 days

pigmentation

  • @ref: 30322
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30322positivegrowth10-40
30322positiveoptimum36mesophilic
62487positivegrowth30mesophilic
67771positivegrowth37mesophilic

culture pH

@refabilitytypepH
30322positivegrowth5.5-7.5
30322positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30322aerobe
62487aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
30322NaClpositivegrowth0.5-10 %
30322NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3032222599arabinose+carbon source
3032228757fructose+carbon source
3032233942ribose+carbon source
3032227082trehalose+carbon source
3032218222xylose+carbon source

enzymes

@refvalueactivityec
30322acid phosphatase+3.1.3.2
30322catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30322marine sediment
62487Tidal flat sediment2009-09-01southern coastRepublic of KoreaKORAsia
67771From tidal sedimentBulkyo, the southern coastRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_14041.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_7243;97_8687;98_10652;99_14041&stattab=map
  • Last taxonomy: Salinimicrobium gaetbulicola
  • 16S sequence: JF340052
  • Sequence Identity:
  • Total samples: 59
  • soil counts: 40
  • aquatic counts: 15
  • animal counts: 4

Sequence information

16S sequences

  • @ref: 30322
  • description: Salinimicrobium gaetbulicola strain BB-My20 16S ribosomal RNA gene, partial sequence
  • accession: JF340052
  • length: 1448
  • database: nuccore
  • NCBI tax ID: 999702

GC content

  • @ref: 30322
  • GC-content: 45.1

External links

@ref: 30322

culture collection no.: KCTC 23579, CCUG 60898, KCTC 23579T

straininfo link

  • @ref: 91575
  • straininfo: 410092

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21685257Salinimicrobium gaetbulicola sp. nov., isolated from tidal flat sediment.Lee SY, Park S, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.033399-02011Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics
Phylogeny26541463Salinimicrobium soli sp. nov., isolated from soil of reclaimed land.Kim JH, Yoon JH, Kim WInt J Syst Evol Microbiol10.1099/ijsem.0.0007412015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/metabolism, Glycolipids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30322Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172666328776041
62487Curators of the CCUGhttps://www.ccug.se/strain?id=60898Culture Collection University of Gothenburg (CCUG) (CCUG 60898)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91575Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410092.1