Strain identifier

BacDive ID: 133730

Type strain: Yes

Species: Cellulophaga geojensis

Strain Designation: M-M6

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 935699 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 30318

BacDive-ID: 133730

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Cellulophaga geojensis M-M6 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 935699
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive133730.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Cellulophaga
  • species: Cellulophaga geojensis
  • full scientific name: Cellulophaga geojensis Park et al. 2012

@ref: 30318

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Cellulophaga

species: Cellulophaga geojensis

strain designation: M-M6

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
30318negative4 µm0.65 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative

colony morphology

  • @ref: 62444
  • incubation period: 1-2 days

pigmentation

  • @ref: 30318
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30318positivegrowth04-40
30318positiveoptimum25mesophilic
62444positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
30318positivegrowth05-08
30318positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30318aerobe
62444aerobe
67771aerobe

spore formation

  • @ref: 30318
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30318NaClpositivegrowth0-7 %
30318NaClpositiveoptimum2 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3031817057cellobiose+carbon source
3031828757fructose+carbon source
3031828260galactose+carbon source
3031817234glucose+carbon source
3031829987glutamate+carbon source
3031817306maltose+carbon source
3031837684mannose+carbon source
3031817814salicin+carbon source
3031817992sucrose+carbon source
3031827082trehalose+carbon source
3031853424tween 20+carbon source
3031853423tween 40+carbon source
3031853425tween 60+carbon source
3031853426tween 80+carbon source
3031818222xylose+carbon source
303184853esculin+hydrolysis

enzymes

@refvalueactivityec
30318acid phosphatase+3.1.3.2
30318alkaline phosphatase+3.1.3.1
30318catalase+1.11.1.6
30318gelatinase+
30318cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30318marine sediment
62444Marine sandGeojeRepublic of KoreaKORAsia
67771From marine sand of Geoje islandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_406.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_102;96_275;97_304;98_338;99_406&stattab=map
  • Last taxonomy: Cellulophaga
  • 16S sequence: HQ596527
  • Sequence Identity:
  • Total samples: 3788
  • soil counts: 208
  • aquatic counts: 3313
  • animal counts: 185
  • plant counts: 82

Sequence information

16S sequences

  • @ref: 30318
  • description: Cellulophaga geojensis strain M-M6 16S ribosomal RNA gene, partial sequence
  • accession: HQ596527
  • length: 1441
  • database: nuccore
  • NCBI tax ID: 935699

GC content

@refGC-contentmethod
3031835.4
6777135.4high performance liquid chromatography (HPLC)

External links

@ref: 30318

culture collection no.: KCTC 23498, CCUG 60801

straininfo link

  • @ref: 91574
  • straininfo: 412085

literature

  • topic: Phylogeny
  • Pubmed-ID: 21828016
  • title: Cellulophaga geojensis sp. nov., a member of the family Flavobacteriaceae isolated from marine sand.
  • authors: Park S, Oh KH, Lee SY, Oh TK, Yoon JH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.033340-0
  • year: 2011
  • mesh: Base Composition, DNA, Bacterial/genetics, Flavobacteriaceae/*classification/genetics/*isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30318Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172665928776041
62444Curators of the CCUGhttps://www.ccug.se/strain?id=60801Culture Collection University of Gothenburg (CCUG) (CCUG 60801)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91574Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412085.1