Strain identifier
BacDive ID: 133721
Type strain: 
Species: Winogradskyella ulvae
Strain history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia
NCBI tax ID(s): 931625 (species)
version 8.1 (current version)
General
@ref: 30274
BacDive-ID: 133721
keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped
description: Winogradskyella ulvae KCTC 23626 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Seaweed epiphyte.
NCBI tax id
- NCBI tax id: 931625
- Matching level: species
strain history
- @ref: 67771
- history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia
doi: 10.13145/bacdive133721.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Winogradskyella
- species: Winogradskyella ulvae
- full scientific name: Winogradskyella ulvae Nedashkovskaya et al. 2012
@ref: 30274
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Winogradskyella
species: Winogradskyella ulvae
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement |
|---|---|---|---|---|---|---|
| 30274 | negative | 2.25 µm | 0.45 µm | rod-shaped | yes | gliding |
| 67771 | rod-shaped | yes | gliding | |||
| 67771 | negative |
pigmentation
- @ref: 30274
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30274 | positive | growth | 04-37 | |
| 30274 | positive | optimum | 26.5 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30274 | positive | growth | 5.5-10 | alkaliphile |
| 30274 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30274 | facultative anaerobe |
| 67771 | aerobe |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30274 | NaCl | positive | growth | 0.5-4 % |
| 30274 | NaCl | positive | optimum | 0.50 % |
observation
- @ref: 67771
- observation: quinones: MK-6
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30274 | 17234 | glucose | + | carbon source |
| 30274 | 17716 | lactose | + | carbon source |
| 30274 | 37684 | mannose | + | carbon source |
| 30274 | 17992 | sucrose | + | carbon source |
| 30274 | 4853 | esculin | + | hydrolysis |
metabolite production
- @ref: 30274
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30274 | acid phosphatase | + | 3.1.3.2 |
| 30274 | alkaline phosphatase | + | 3.1.3.1 |
| 30274 | catalase | + | 1.11.1.6 |
| 30274 | gelatinase | + | |
| 30274 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 30274 | Seaweed epiphyte | ||||
| 67771 | From the green algae 'Ulva fenestrata` | Troitsa Bay, the East Sea(Sea of Japan) | Russia | RUS | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Other | #Epibiont |
| #Host | #Plants | #Aquatic plant |
taxonmaps
- @ref: 69479
- File name: preview.99_106530.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_3462;97_54722;98_72419;99_106530&stattab=map
- Last taxonomy: Winogradskyella ulvae subclade
- 16S sequence: HQ456127
- Sequence Identity:
- Total samples: 8
- aquatic counts: 8
Sequence information
16S sequences
- @ref: 30274
- description: Winogradskyella ulvae strain KMM 6390 16S ribosomal RNA gene, partial sequence
- accession: HQ456127
- length: 1406
- database: nuccore
- NCBI tax ID: 931625
GC content
- @ref: 30274
- GC-content: 34.2
External links
@ref: 30274
culture collection no.: KCTC 23626, LMG 26444, KMM 6390
straininfo link
- @ref: 91571
- straininfo: 377349
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21841007 | Winogradskyella ulvae sp. nov., an epiphyte of a Pacific seaweed, and emended descriptions of the genus Winogradskyella and Winogradskyella thalassocola, Winogradskyella echinorum, Winogradskyella exilis and Winogradskyella eximia. | Nedashkovskaya OI, Kukhlevskiy AD, Zhukova NV | Int J Syst Evol Microbiol | 10.1099/ijs.0.032219-0 | 2011 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Japan, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater, Seaweed/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
| Phylogeny | 23124762 | Winogradskyella jejuensis sp. nov., a marine bacterium isolated from a brown alga Carpopeltis affinis. | Kim JY, Oh DC | J Microbiol | 10.1007/s12275-012-2447-0 | 2012 | Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phaeophyta/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Metabolism |
| Phylogeny | 23416570 | Winogradskyella pulchriflava sp. nov., isolated from marine sediment. | Kim SJ, Choi YR, Park SJ, Kim JG, Shin KS, Roh DH, Rhee SK | Int J Syst Evol Microbiol | 10.1099/ijs.0.049502-0 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 25979633 | Winogradskyella eckloniae sp. nov., a marine bacterium isolated from the brown alga Ecklonia cava. | Kim JY, Park SH, Seo GY, Kim YJ, Oh DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.000334 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phaeophyta/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30274 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26615 | 28776041 |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91571 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID377349.1 |