Strain identifier
BacDive ID: 133719
Type strain: 
Species: Salinirepens amamiensis
Strain Designation: AM11-6
NCBI tax ID(s): 667303 (species)
version 8.1 (current version)
General
@ref: 30265
BacDive-ID: 133719
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Salinirepens amamiensis AM11-6 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 667303
- Matching level: species
doi: 10.13145/bacdive133719.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Crocinitomicaceae
- genus: Salinirepens
- species: Salinirepens amamiensis
- full scientific name: Salinirepens amamiensis Muramatsu et al. 2012
@ref: 30265
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Crocinitomicaceae
genus: Salinirepens
species: Salinirepens Amamiensis
strain designation: AM11-6
type strain: yes
Morphology
cell morphology
- @ref: 30265
- gram stain: negative
- cell length: 18 µm
- cell width: 0.55 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 30265
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30265 | positive | growth | 10-40 | |
| 30265 | positive | optimum | 35 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30265 | positive | growth | 06-11 | alkaliphile |
| 30265 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30265
- oxygen tolerance: aerobe
spore formation
- @ref: 30265
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30265 | NaCl | positive | growth | 01-06 % |
| 30265 | NaCl | positive | optimum | 2 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30265 | 30089 | acetate | + | carbon source |
| 30265 | 15361 | pyruvate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30265 | catalase | + | 1.11.1.6 |
| 30265 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30265
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_13117.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_592;96_6767;97_8100;98_9932;99_13117&stattab=map
- Last taxonomy: Salinirepens amamiensis subclade
- 16S sequence: AB517714
- Sequence Identity:
- Total samples: 945
- soil counts: 54
- aquatic counts: 858
- animal counts: 23
- plant counts: 10
Sequence information
16S sequences
- @ref: 30265
- description: Salinirepens amamiensis gene for 16S ribosomal RNA, partial sequence
- accession: AB517714
- length: 1450
- database: nuccore
- NCBI tax ID: 667303
GC content
- @ref: 30265
- GC-content: 36.4
External links
@ref: 30265
culture collection no.: NBRC 101268, NCIMB 14607
literature
- topic: Phylogeny
- Pubmed-ID: 22081717
- title: Salinirepens amamiensis gen. nov., sp. nov., a member of the family Cryomorphaceae isolated from seawater, and emended descriptions of the genera Fluviicola and Wandonia.
- authors: Muramatsu Y, Takahashi M, Kamakura Y, Suzuki KI, Nakagawa Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.032029-0
- year: 2011
- mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30265 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26606 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |