Strain identifier

BacDive ID: 133696

Type strain: Yes

Species: Neptuniibacter halophilus

Strain Designation: antisso-13

NCBI tax ID(s): 651666 (species)

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General

@ref: 30184

BacDive-ID: 133696

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile

description: Neptuniibacter halophilus antisso-13 is an aerobe, Gram-negative, motile bacterium that was isolated from hypersaline environment.

NCBI tax id

  • NCBI tax id: 651666
  • Matching level: species

doi: 10.13145/bacdive133696.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Neptuniibacter
  • species: Neptuniibacter halophilus
  • full scientific name: Neptuniibacter halophilus Chen et al. 2012

@ref: 30184

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Neptuniibacter

species: Neptuniibacter halophilus

strain designation: antisso-13

type strain: yes

Morphology

cell morphology

  • @ref: 30184
  • gram stain: negative
  • cell length: 1.6 µm
  • cell width: 0.3 µm
  • motility: yes

pigmentation

  • @ref: 30184
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30184positivegrowth20-37
30184positiveoptimum27.5mesophilic

culture pH

@refabilitytypepH
30184positivegrowth07-08
30184positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 30184
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30184NaClpositivegrowth0.5-6 %
30184NaClpositiveoptimum3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3018430089acetate+carbon source
3018416449alanine+carbon source
3018429016arginine+carbon source
3018435391aspartate+carbon source
3018428757fructose+carbon source
3018428260galactose+carbon source
3018416865gamma-aminobutyric acid+carbon source
3018429987glutamate+carbon source
3018417754glycerol+carbon source
3018415428glycine+carbon source
3018427570histidine+carbon source
3018424996lactate+carbon source
3018425017leucine+carbon source
3018417268myo-inositol+carbon source
3018418257ornithine+carbon source
3018417148putrescine+carbon source
3018417822serine+carbon source
3018430911sorbitol+carbon source
3018430031succinate+carbon source
3018426986threonine+carbon source
3018416199urea+carbon source
3018418222xylose+carbon source
301844853esculin+hydrolysis

enzymes

@refvalueactivityec
30184alkaline phosphatase+3.1.3.1
30184catalase+1.11.1.6
30184cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 30184
  • sample type: hypersaline environment

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_20466.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_10399;97_12571;98_15475;99_20466&stattab=map
  • Last taxonomy: Neptuniibacter halophilus subclade
  • 16S sequence: GQ131677
  • Sequence Identity:
  • Total samples: 121
  • aquatic counts: 103
  • animal counts: 18

Sequence information

16S sequences

  • @ref: 30184
  • description: Neptuniibacter halophilus strain antisso-13 16S ribosomal RNA gene, partial sequence
  • accession: GQ131677
  • length: 1418
  • database: nuccore
  • NCBI tax ID: 651666

GC content

  • @ref: 30184
  • GC-content: 54.2

External links

@ref: 30184

culture collection no.: LMG 25378, BCRC 80079

straininfo link

  • @ref: 91562
  • straininfo: 363667

literature

  • topic: Phylogeny
  • Pubmed-ID: 21705446
  • title: Neptuniibacter halophilus sp. nov., isolated from a salt pan, and emended description of the genus Neptuniibacter.
  • authors: Chen MH, Sheu SY, Chiu TF, Chen WM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.030379-0
  • year: 2011
  • mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Fatty Acids/analysis, Flagella/physiology, Geologic Sediments/*microbiology, Locomotion, Molecular Sequence Data, Oceanospirillaceae/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30184Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172653228776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91562Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID363667.1