Strain identifier

BacDive ID: 133689

Type strain: Yes

Species: Methylobacterium gossipiicola

Strain Designation: Gh-105

NCBI tax ID(s): 582675 (species)

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General

@ref: 30163

BacDive-ID: 133689

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Methylobacterium gossipiicola Gh-105 is an aerobe, Gram-negative, motile bacterium that was isolated from plant associated.

NCBI tax id

  • NCBI tax id: 582675
  • Matching level: species

doi: 10.13145/bacdive133689.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Methylobacteriaceae
  • genus: Methylobacterium
  • species: Methylobacterium gossipiicola
  • full scientific name: Methylobacterium gossipiicola Madhaiyan et al. 2012

@ref: 30163

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Methylobacteriaceae

genus: Methylobacterium

species: Methylobacterium gossipiicola

strain designation: Gh-105

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30163negative1.4-2.2 µm0.4-0.5 µmrod-shapedyes
69480negative100
69480yes92.824

pigmentation

  • @ref: 30163
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30163positivegrowth20-30
30163positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
30163positivegrowth5.0-9.0alkaliphile
30163positiveoptimum6.8

Physiology and metabolism

oxygen tolerance

  • @ref: 30163
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30163no
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30163370543-hydroxybutyrate+carbon source
3016330089acetate+carbon source
3016316449alanine+carbon source
3016322599arabinose+carbon source
3016335391aspartate+carbon source
3016317126DL-carnitine+carbon source
3016317057cellobiose+carbon source
3016316947citrate+carbon source
3016323652dextrin+carbon source
3016315740formate+carbon source
3016328757fructose+carbon source
3016328260galactose+carbon source
3016324265gluconate+carbon source
3016317234glucose+carbon source
3016332323glucuronamide+carbon source
3016329987glutamate+carbon source
3016317754glycerol+carbon source
3016328087glycogen+carbon source
3016324996lactate+carbon source
3016325017leucine+carbon source
3016329864mannitol+carbon source
3016337684mannose+carbon source
3016317272propionate+carbon source
3016351850methyl pyruvate+carbon source
3016326490quinate+carbon source
3016317822serine+carbon source
3016330911sorbitol+carbon source
3016330031succinate+carbon source
3016317992sucrose+carbon source
3016326986threonine+carbon source
3016327082trehalose+carbon source

enzymes

@refvalueactivityec
30163catalase+1.11.1.6
30163cytochrome oxidase+1.9.3.1
30163urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 30163
  • sample type: plant associated

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

taxonmaps

  • @ref: 69479
  • File name: preview.99_2004.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_372;97_420;98_479;99_2004&stattab=map
  • Last taxonomy: Methylobacterium
  • 16S sequence: EU912445
  • Sequence Identity:
  • Total samples: 14971
  • soil counts: 2415
  • aquatic counts: 1965
  • animal counts: 7622
  • plant counts: 2969

Sequence information

16S sequences

  • @ref: 30163
  • description: Methylobacterium gossipiicola strain Gh-105 16S ribosomal RNA gene, partial sequence
  • accession: EU912445
  • length: 1351
  • database: nuccore
  • NCBI tax ID: 582675

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methylobacterium gossipiicola Gh-105GCA_900113485scaffoldncbi582675
66792Methylobacterium gossipiicola Gh-1052651870128draftimg582675

GC content

  • @ref: 30163
  • GC-content: 64.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.509no
flagellatedno69.959no
gram-positiveno97.411yes
anaerobicno97.029yes
aerobicyes92.587yes
halophileno90.382no
spore-formingno93.425yes
glucose-fermentno89.824no
thermophileno98.396no
glucose-utilyes84.403no

External links

@ref: 30163

culture collection no.: CCM 7572, NRRL B-51692

literature

  • topic: Phylogeny
  • Pubmed-ID: 21378138
  • title: Methylobacterium gossipiicola sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the cotton phyllosphere.
  • authors: Madhaiyan M, Poonguzhali S, Senthilkumar M, Lee JS, Lee KC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.030148-0
  • year: 2011
  • mesh: Bacterial Typing Techniques, Base Composition, Carbon/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gossypium/*microbiology, India, Locomotion, Methylobacterium/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/metabolism, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30163Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172651328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1