Strain identifier
BacDive ID: 133666
Type strain: 
Species: Cesiribacter roseus
Strain Designation: 311
NCBI tax ID(s): 877549 (species)
version 9 (current version)
General
@ref: 30023
BacDive-ID: 133666
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Cesiribacter roseus 311 is an aerobe, Gram-negative, motile bacterium that was isolated from Desert sand.
NCBI tax id
- NCBI tax id: 877549
- Matching level: species
doi: 10.13145/bacdive133666.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Cesiribacteraceae
- genus: Cesiribacter
- species: Cesiribacter roseus
- full scientific name: Cesiribacter roseus Liu et al. 2012
@ref: 30023
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Flammeovirgaceae
genus: Cesiribacter
species: Cesiribacter roseus
strain designation: 311
type strain: yes
Morphology
cell morphology
- @ref: 30023
- gram stain: negative
- cell length: 1.5-3.0 µm
- cell width: 0.4-0.5 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30023
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 30023 | positive | growth | 04-37 |
| 30023 | positive | optimum | 30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30023 | positive | growth | 7.0-10.0 | alkaliphile |
| 30023 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 30023
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30023 | NaCl | positive | growth | <3 % |
| 30023 | NaCl | positive | optimum | 2 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30023 | 22599 | arabinose | + | carbon source |
| 30023 | 28053 | melibiose | + | carbon source |
| 30023 | 17992 | sucrose | + | carbon source |
| 30023 | 4853 | esculin | + | hydrolysis |
| 30023 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30023 | alkaline phosphatase | + | 3.1.3.1 |
| 30023 | catalase | + | 1.11.1.6 |
| 30023 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 30023
- sample type: Desert sand
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Sandy |
| #Condition | #Xerophilic |
taxonmaps
- @ref: 69479
- File name: preview.99_7390.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_186;96_3456;97_4240;98_5418;99_7390&stattab=map
- Last taxonomy: Cesiribacter roseus subclade
- 16S sequence: HM775387
- Sequence Identity:
- Total samples: 16193
- soil counts: 262
- aquatic counts: 278
- animal counts: 15619
- plant counts: 34
Sequence information
16S sequences
- @ref: 30023
- description: Cesiribacter roseus strain 311 16S ribosomal RNA gene, partial sequence
- accession: HM775387
- length: 1413
- database: nuccore
- NCBI tax ID: 877549
GC content
- @ref: 30023
- GC-content: 47.1
External links
@ref: 30023
culture collection no.: CCTCC AB 207142, KACC 15456
literature
- topic: Phylogeny
- Pubmed-ID: 21335497
- title: Cesiribacter roseus sp. nov., a pink-pigmented bacterium isolated from desert sand.
- authors: Liu M, Qi H, Luo X, Dai J, Peng F, Fang C
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.028423-0
- year: 2011
- mesh: Aerobiosis, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Silicon Dioxide, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30023 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26387 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |