Strain identifier
BacDive ID: 133652
Type strain: 
Species: Chryseobacterium vietnamense
Strain Designation: GIMN1.005
NCBI tax ID(s): 866785 (species)
version 8.1 (current version)
General
@ref: 29940
BacDive-ID: 133652
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Chryseobacterium vietnamense GIMN1.005 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 866785
- Matching level: species
doi: 10.13145/bacdive133652.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium vietnamense
- full scientific name: Chryseobacterium vietnamense Li and Zhu 2012
@ref: 29940
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Chryseobacterium
species: Chryseobacterium vietnamense
strain designation: GIMN1.005
type strain: yes
Morphology
cell morphology
- @ref: 29940
- gram stain: negative
- cell length: 01-02 µm
- cell width: 0.4-0.8 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29940
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29940 | positive | growth | 05-37 | |
| 29940 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29940 | positive | growth | 06-09 | alkaliphile |
| 29940 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29940
- oxygen tolerance: aerobe
spore formation
- @ref: 29940
- spore formation: no
halophily
- @ref: 29940
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-2 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29940 | 33984 | fucose | + | carbon source |
| 29940 | 29864 | mannitol | + | carbon source |
| 29940 | 27082 | trehalose | + | carbon source |
| 29940 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29940 | catalase | + | 1.11.1.6 |
| 29940 | gelatinase | + | |
| 29940 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 29940
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 29940
- description: Chryseobacterium vietnamense strain GIMN1.005 16S ribosomal RNA gene, partial sequence
- accession: HM212415
- length: 1390
- database: nuccore
- NCBI tax ID: 866785
GC content
- @ref: 29940
- GC-content: 42.1
External links
@ref: 29940
culture collection no.: CCTCC M209230, NRRL B-59550
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21571927 | Chryseobacterium vietnamense sp. nov., isolated from forest soil. | Li Z, Zhu H | Int J Syst Evol Microbiol | 10.1099/ijs.0.027201-0 | 2011 | Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Polyenes/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/*microbiology, Vietnam, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24958763 | Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer. | Venil CK, Nordin N, Zakaria ZA, Ahmad WA | Int J Syst Evol Microbiol | 10.1099/ijs.0.063594-0 | 2014 | Artocarpus/*microbiology, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 34739366 | Chryseobacterium endalhagicum sp. nov., isolated from seed of leguminous plant. | Zhang X, Guo X, Kahaer M, Tian T, Sun Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005077 | 2021 | Bacterial Typing Techniques, Base Composition, China, *Chryseobacterium/classification/isolation & purification, DNA, Bacterial/genetics, *Fabaceae/microbiology, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seeds/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29940 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26311 | 28776041 |