Strain identifier

BacDive ID: 133639

Type strain: Yes

Species: Streptomyces tacrolimicus

NCBI tax ID(s): 330919 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 29889

BacDive-ID: 133639

keywords: 16S sequence, Bacteria, aerobe, spore-forming

description: Streptomyces tacrolimicus CECT 7664 is an aerobe, spore-forming bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 330919
  • Matching level: species

doi: 10.13145/bacdive133639.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces tacrolimicus
  • full scientific name: Streptomyces tacrolimicus Martínez-Castro et al. 2011

@ref: 29889

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces tacrolimicus

type strain: yes

Morphology

pigmentation

  • @ref: 29889
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29889positivegrowth16-30
29889positiveoptimum23psychrophilic

culture pH

@refabilitytypepHPH range
29889positivegrowth05-09alkaliphile
29889positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29889
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29889
  • spore formation: yes

halophily

  • @ref: 29889
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <10 %

observation

  • @ref: 29889
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2988922653asparagine+carbon source
2988928757fructose+carbon source
2988917234glucose+carbon source
2988927570histidine+carbon source
2988917716lactose+carbon source
2988929864mannitol+carbon source
2988937684mannose+carbon source
2988928044phenylalanine+carbon source
2988926546rhamnose+carbon source

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_7821.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_5715;99_7821&stattab=map
  • Last taxonomy: Streptomyces tacrolimicus
  • 16S sequence: FN429653
  • Sequence Identity:
  • Total samples: 25
  • soil counts: 20
  • animal counts: 5

Sequence information

16S sequences

  • @ref: 29889
  • description: Streptomyces tacrolimicus partial 16S rRNA gene, strain ATCC 55098
  • accession: FN429653
  • length: 1629
  • database: nuccore
  • NCBI tax ID: 330919

GC content

  • @ref: 29889
  • GC-content: 71

External links

@ref: 29889

culture collection no.: CECT 7664, ATCC 55098

straininfo link

  • @ref: 91537
  • straininfo: 43524

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20525816Streptomyces tacrolimicus sp. nov., a low producer of the immunosuppressant tacrolimus (FK506).Martinez-Castro M, Barreiro C, Romero F, Fernandez-Chimeno RI, Martin JFInt J Syst Evol Microbiol10.1099/ijs.0.024273-02010DNA, Bacterial/genetics, Immunosuppressive Agents/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Tacrolimus/*metabolismMetabolism
Metabolism21792593Characterisation of a gamma-butyrolactone receptor of Streptomyces tacrolimicus: effect on sporulation and tacrolimus biosynthesis.Salehi-Najafabadi Z, Barreiro C, Martinez-Castro M, Solera E, Martin JFAppl Microbiol Biotechnol10.1007/s00253-011-3466-120114-Butyrolactone/metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/*metabolism, Base Sequence, Cloning, Molecular, Down-Regulation, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Receptors, GABA-A/chemistry/genetics/*metabolism, Sequence Alignment, Spores, Bacterial/genetics/*growth & development/metabolism, Streptomyces/chemistry/genetics/growth & development/*metabolism, Tacrolimus/*metabolism, Up-RegulationEnzymology
Phylogeny29034858Streptomyces kalpinensis sp. nov., an actinomycete isolated from a salt water beach.Ma GQ, Xia ZF, Wan CX, Zhang Y, Luo XX, Zhang LLInt J Syst Evol Microbiol10.1099/ijsem.0.0021252017Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, Bathing Beaches, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29889Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172626228776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91537Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID43524.1