Strain identifier
BacDive ID: 133638
Type strain: 
Species: Streptomyces zinciresistens
Strain Designation: K42
Strain history: Y. B. Lin and G.-H. Wei CCNWNQ 0016 (=K42).
NCBI tax ID(s): 1073330 (species)
version 9.1 (current version)
General
@ref: 29883
BacDive-ID: 133638
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Streptomyces zinciresistens K42 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1073330
- Matching level: species
strain history
- @ref: 67770
- history: Y. B. Lin and G.-H. Wei CCNWNQ 0016 (=K42).
doi: 10.13145/bacdive133638.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces zinciresistens
- full scientific name: Streptomyces zinciresistens Lin et al. 2011
@ref: 29883
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces zinciresistens
strain designation: K42
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 29883 | positive | |
| 69480 | positive | 91.119 |
pigmentation
- @ref: 29883
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 29883 | positive | growth | 20-37 |
| 29883 | positive | optimum | 28 |
| 67770 | positive | growth | 28 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29883 | positive | growth | 5.0-11.0 | alkaliphile |
| 29883 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 29883 | aerobe | |
| 69480 | aerobe | 91.195 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29883 | yes | |
| 69480 | yes | 92.117 |
halophily
- @ref: 29883
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 4 %
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29883 | 22599 | arabinose | + | carbon source |
| 29883 | 17716 | lactose | + | carbon source |
| 29883 | 17306 | maltose | + | carbon source |
| 29883 | 17268 | myo-inositol | + | carbon source |
| 29883 | 26546 | rhamnose | + | carbon source |
| 29883 | 30911 | sorbitol | + | carbon source |
| 29883 | 17992 | sucrose | + | carbon source |
metabolite production
- @ref: 29883
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
- @ref: 29883
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 29883 | soil | |||
| 67770 | Zinc-contaminated soil from Shaanxi Province | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_6985.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_5130;99_6985&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: GU225938
- Sequence Identity:
- Total samples: 18
- soil counts: 18
Sequence information
16S sequences
- @ref: 29883
- description: Streptomyces zinciresistens K42 16S ribosomal RNA gene, partial sequence
- accession: GU225938
- length: 1460
- database: nuccore
- NCBI tax ID: 700597
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces zinciresistens K42 | 700597.3 | wgs | patric | 700597 |
| 66792 | Streptomyces zinciresistens K42 | 2531839181 | draft | img | 700597 |
| 67770 | Streptomyces zinciresistens K42 | GCA_000225525 | contig | ncbi | 700597 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 29883 | 70.3 | |
| 67770 | 70.3 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.119 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.396 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.117 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.195 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 86 | no |
External links
@ref: 29883
culture collection no.: ACCC 41871, HAMBI 3107, CCNWNQ 0016, JCM 18080
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20400670 | Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine. | Lin YB, Wang XY, Li HF, Wang NN, Wang HX, Tang M, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.024018-0 | 2010 | Anti-Bacterial Agents/*toxicity, Bacterial Typing Techniques, China, Cluster Analysis, Copper, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Zinc/*toxicity | Genetics |
| Metabolism | 22001317 | Bioaccumulation characterization of zinc and cadmium by Streptomyces zinciresistens, a novel actinomycete. | Lin Y, Wang X, Wang B, Mohamad O, Wei G | Ecotoxicol Environ Saf | 10.1016/j.ecoenv.2011.09.016 | 2011 | Cadmium/*metabolism, Cations, Divalent/metabolism, Environmental Pollutants/*metabolism, Models, Chemical, Streptomyces/*metabolism, Zinc/*metabolism |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 29883 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26256 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |