Strain identifier
BacDive ID: 133616
Type strain: 
Species: Marinobacterium coralli
Strain Designation: R-40509
NCBI tax ID(s): 693965 (species)
version 8.1 (current version)
General
@ref: 29793
BacDive-ID: 133616
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Marinobacterium coralli R-40509 is an aerobe, Gram-negative, motile bacterium that was isolated from mucus of coral.
NCBI tax id
- NCBI tax id: 693965
- Matching level: species
doi: 10.13145/bacdive133616.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacterium
- species: Marinobacterium coralli
- full scientific name: Marinobacterium coralli Chimetto et al. 2011
@ref: 29793
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacterium
species: Marinobacterium coralli
strain designation: R-40509
type strain: yes
Morphology
cell morphology
- @ref: 29793
- gram stain: negative
- cell length: 3.5 µm
- cell width: 1 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29793
- production: no
Culture and growth conditions
culture temp
- @ref: 29793
- growth: positive
- type: growth
- temperature: 20-40
Physiology and metabolism
oxygen tolerance
- @ref: 29793
- oxygen tolerance: aerobe
halophily
- @ref: 29793
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 01-07 %
observation
- @ref: 29793
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29793 | 21217 | L-alaninamide | + | carbon source |
| 29793 | 16449 | alanine | + | carbon source |
| 29793 | 28644 | 2-oxopentanoate | + | carbon source |
| 29793 | 22653 | asparagine | + | carbon source |
| 29793 | 16947 | citrate | + | carbon source |
| 29793 | 29987 | glutamate | + | carbon source |
| 29793 | 24996 | lactate | + | carbon source |
| 29793 | 51850 | methyl pyruvate | + | carbon source |
| 29793 | 506227 | N-acetylglucosamine | + | carbon source |
| 29793 | 50048 | phenylethylamine | + | carbon source |
| 29793 | 28044 | phenylalanine | + | carbon source |
| 29793 | 26271 | proline | + | carbon source |
| 29793 | 30031 | succinate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29793 | acid phosphatase | + | 3.1.3.2 |
| 29793 | alkaline phosphatase | + | 3.1.3.1 |
| 29793 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 29793
- sample type: mucus of coral
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
taxonmaps
- @ref: 69479
- File name: preview.99_13858.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_3310;97_4059;98_10496;99_13858&stattab=map
- Last taxonomy: Marinobacterium
- 16S sequence: GU183820
- Sequence Identity:
- Total samples: 1458
- soil counts: 121
- aquatic counts: 1185
- animal counts: 138
- plant counts: 14
Sequence information
16S sequences
- @ref: 29793
- description: Marinobacterium coralli strain R-40509 16S ribosomal RNA gene, partial sequence
- accession: GU183820
- length: 1349
- database: nuccore
- NCBI tax ID: 693965
GC content
- @ref: 29793
- GC-content: 58.5
External links
@ref: 29793
culture collection no.: LMG 25435, CAIM 1449
straininfo link
- @ref: 91527
- straininfo: 363631
literature
- topic: Phylogeny
- Pubmed-ID: 20154332
- title: Marinobacterium coralli sp. nov., isolated from mucus of coral (Mussismilia hispida).
- authors: Chimetto LA, Cleenwerck I, Brocchi M, Willems A, De Vos P, Thompson FL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.021105-0
- year: 2010
- mesh: Alteromonadaceae/*classification/genetics/*isolation & purification/physiology, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, Brazil, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29793 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26171 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91527 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID363631.1 |