Strain identifier

BacDive ID: 133557

Type strain: Yes

Species: Endozoicomonas montiporae

Strain Designation: CL-33

NCBI tax ID(s): 1027273 (species)

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General

@ref: 29499

BacDive-ID: 133557

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Endozoicomonas montiporae CL-33 is an aerobe, Gram-negative, motile bacterium that was isolated from Coral.

NCBI tax id

  • NCBI tax id: 1027273
  • Matching level: species

doi: 10.13145/bacdive133557.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Endozoicomonadaceae
  • genus: Endozoicomonas
  • species: Endozoicomonas montiporae
  • full scientific name: Endozoicomonas montiporae Yang et al. 2010

@ref: 29499

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Endozoicomonadaceae

genus: Endozoicomonas

species: Endozoicomonas montiporae

strain designation: CL-33

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29499negative2 µm0.6 µmrod-shapedyes
69480negative99.996

pigmentation

  • @ref: 29499
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29499positivegrowth15-35
29499positiveoptimum25mesophilic

culture pH

@refabilitytypepHPH range
29499positivegrowth06-10alkaliphile
29499positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 29499
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.979

halophily

@refsaltgrowthtested relationconcentration
29499NaClpositivegrowth01-03 %
29499NaClpositiveoptimum2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2949930089acetate+carbon source
2949921217L-alaninamide+carbon source
2949916449alanine+carbon source
2949917057cellobiose+carbon source
2949923652dextrin+carbon source
2949928260galactose+carbon source
2949917234glucose+carbon source
2949917754glycerol+carbon source
2949917596inosine+carbon source
2949917306maltose+carbon source
2949928053melibiose+carbon source
2949951850methyl pyruvate+carbon source
29499506227N-acetylglucosamine+carbon source
2949917272propionate+carbon source
2949930031succinate+carbon source
2949917748thymidine+carbon source
2949953423tween 40+carbon source
2949953426tween 80+carbon source
2949916704uridine+carbon source
294994853esculin+hydrolysis
2949917632nitrate+reduction

enzymes

@refvalueactivityec
29499acid phosphatase+3.1.3.2
29499alkaline phosphatase+3.1.3.1
29499catalase+1.11.1.6
29499cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 29499
  • sample type: Coral

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Cnidaria (Corals)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1215.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_202;96_709;97_828;98_962;99_1215&stattab=map
  • Last taxonomy: Endozoicomonas montiporae subclade
  • 16S sequence: FJ347758
  • Sequence Identity:
  • Total samples: 1047
  • soil counts: 52
  • aquatic counts: 894
  • animal counts: 100
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 29499
  • description: Endozoicomonas montiporae CL-33 16S ribosomal RNA gene, partial sequence
  • accession: FJ347758
  • length: 1464
  • database: nuccore
  • NCBI tax ID: 570277

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Endozoicomonas montiporae CL-33GCA_001583435chromosomencbi570277
66792Endozoicomonas montiporae LMG 24815GCA_000722565scaffoldncbi1027273
66792Endozoicomonas montiporae CL-33570277.3completepatric570277
66792Endozoicomonas montiporae strain LMG 248151027273.5wgspatric1027273
66792Endozoicomonas montiporae LMG 248152574179789draftimg1027273
66792Endozoicomonas montiporae CL-332687453173completeimg570277

GC content

  • @ref: 29499
  • GC-content: 50

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.756yes
anaerobicno96.952yes
halophileyes72.427no
spore-formingno94.853no
glucose-utilyes93.147yes
thermophileno97.816no
flagellatedyes87.354no
aerobicyes71.122yes
motileyes88.884no
glucose-fermentno61.554no

External links

@ref: 29499

culture collection no.: LMG 24815, BCRC 17933

straininfo link

  • @ref: 91502
  • straininfo: 359550

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19666790Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata.Yang CS, Chen MH, Arun AB, Chen CA, Wang JT, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.014357-02009Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, TaiwanGenetics
Phylogeny22544802Endozoicomonas numazuensis sp. nov., a gammaproteobacterium isolated from marine sponges, and emended description of the genus Endozoicomonas Kurahashi and Yokota 2007.Nishijima M, Adachi K, Katsuta A, Shizuri Y, Yamasato KInt J Syst Evol Microbiol10.1099/ijs.0.042077-02012Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, *Phylogeny, Porifera/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny23832969Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas.Pike RE, Haltli B, Kerr RGInt J Syst Evol Microbiol10.1099/ijs.0.051490-02013Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Bahamas, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Florida, Gammaproteobacteria/*classification/genetics/isolation & purification, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Pathogenicity27014194Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host.Ding JY, Shiu JH, Chen WM, Chiang YR, Tang SLFront Microbiol10.3389/fmicb.2016.002512016
Phylogeny32043957Aestuariirhabdus litorea gen. nov., sp. nov., isolated from a sea tidal flat and proposal of Aestuariirhabdaceae fam. nov.Khan SA, Jung HS, Kim HM, Oh J, Lee SS, Jeon COInt J Syst Evol Microbiol10.1099/ijsem.0.0039762020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29499Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172589928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91502Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID359550.1