Strain identifier

BacDive ID: 133519

Type strain: Yes

Species: Luteipulveratus mongoliensis

Strain Designation: MN07-A0370

NCBI tax ID(s): 571913 (species)

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General

@ref: 29269

BacDive-ID: 133519

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, coccus-shaped

description: Luteipulveratus mongoliensis MN07-A0370 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 571913
  • Matching level: species

doi: 10.13145/bacdive133519.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Dermacoccaceae
  • genus: Luteipulveratus
  • species: Luteipulveratus mongoliensis
  • full scientific name: Luteipulveratus mongoliensis Ara et al. 2010

@ref: 29269

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Dermacoccaceae

genus: Luteipulveratus

species: Luteipulveratus mongoliensis

strain designation: MN07-A0370

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29269positive1.2 µm0.5 µmcoccus-shapedno
69480positive100
69480no92.034

pigmentation

  • @ref: 29269
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29269positivegrowth20-28
29269positiveoptimum24psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 29269
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
29269no
69481no95
69480no94.537

halophily

@refsaltgrowthtested relationconcentration
29269NaClpositivegrowth<3 %
29269NaClpositiveoptimum<2 %

observation

  • @ref: 29269
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2926917234glucose+carbon source
2926917306maltose+carbon source
2926917992sucrose+carbon source

enzymes

@refvalueactivityec
29269acid phosphatase+3.1.3.2
29269alkaline phosphatase+3.1.3.1
29269catalase+1.11.1.6
29269gelatinase+
29269urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 29269
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_6091.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_127;97_136;98_153;99_6091&stattab=map
  • Last taxonomy: Luteipulveratus mongoliensis
  • 16S sequence: AB468971
  • Sequence Identity:
  • Total samples: 1689
  • soil counts: 335
  • aquatic counts: 172
  • animal counts: 1128
  • plant counts: 54

Sequence information

16S sequences

  • @ref: 29269
  • description: Luteipulveratus mongoliensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB468971
  • length: 1491
  • database: nuccore
  • NCBI tax ID: 571913

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Luteipulveratus mongoliensis MN07-A0370GCA_001190945completencbi571913
66792Luteipulveratus mongoliensis MN07-A03702645727824completeimg571913

GC content

  • @ref: 29269
  • GC-content: 68.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno95no
motileno95.121no
flagellatedno97.34yes
gram-positiveyes91.673yes
anaerobicno99.151yes
aerobicyes91.652no
halophileno94.856no
spore-formingyes51.929no
thermophileno99.529yes
glucose-utilyes90.024no
glucose-fermentno89.824no

External links

@ref: 29269

culture collection no.: NBRC 105296, VTCC D9-09

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19654344Luteipulveratus mongoliensis gen. nov., sp. nov., an actinobacterial taxon in the family Dermacoccaceae.Ara I, Yamamura H, Tsetseg B, Daram D, Ando KInt J Syst Evol Microbiol10.1099/ijs.0.009936-02009Actinomycetales/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyMetabolism
Phylogeny21811262Flexivirga alba gen. nov., sp. nov., an actinobacterial taxon in the family Dermacoccaceae.Anzai K, Sugiyama T, Sukisaki M, Sakiyama Y, Otoguro M, Ando KJ Antibiot (Tokyo)10.1038/ja.2011.622011Actinobacteria/*classification/genetics/isolation & purification, DNA, Bacterial, Electroplating, *RNA, Bacterial, *RNA, Ribosomal, 16S, *Soil Microbiology, Waste Disposal, FluidEnzymology
Phylogeny26303235Luteipulveratus halotolerans sp. nov., an actinobacterium (Dermacoccaceae) from forest soil.Juboi H, Basik AA, Shamsul SSG, Arnold P, Schmitt EK, Sanglier JJ, Yeo TCInt J Syst Evol Microbiol10.1099/ijsem.0.0005482015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Malaysia, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29269Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172568628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1