Strain identifier

BacDive ID: 133518

Type strain: Yes

Species: Meridianimaribacter flavus

Strain Designation: NH57N

NCBI tax ID(s): 571115 (species)

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General

@ref: 29264

BacDive-ID: 133518

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Meridianimaribacter flavus NH57N is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 571115
  • Matching level: species

doi: 10.13145/bacdive133518.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Meridianimaribacter
  • species: Meridianimaribacter flavus
  • full scientific name: Meridianimaribacter flavus Wang et al. 2010

@ref: 29264

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Meridianimaribacter

species: Meridianimaribacter flavus

strain designation: NH57N

type strain: yes

Morphology

cell morphology

  • @ref: 29264
  • gram stain: negative
  • cell length: 1.72 µm
  • cell width: 0.425 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

pigmentation

  • @ref: 29264
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29264positivegrowth09-37
29264positiveoptimum33.5mesophilic

culture pH

@refabilitytypepHPH range
29264positivegrowth6.5-8.5alkaliphile
29264positiveoptimum7.8

Physiology and metabolism

oxygen tolerance

  • @ref: 29264
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29264
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29264NaClpositivegrowth0.5-4 %
29264NaClpositiveoptimum1.25 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2926430089acetate+carbon source
2926440585alpha-cyclodextrin+carbon source
29264286442-oxopentanoate+carbon source
2926417057cellobiose+carbon source
2926423652dextrin+carbon source
2926417234glucose+carbon source
2926424996lactate+carbon source
2926437684mannose+carbon source
2926417268myo-inositol+carbon source
2926426271proline+carbon source
2926417272propionate+carbon source
2926416634raffinose+carbon source
2926417992sucrose+carbon source
2926427082trehalose+carbon source

enzymes

@refvalueactivityec
29264catalase+1.11.1.6
29264gelatinase+
29264cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 29264
  • sample type: marine sediment

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_11811.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_5978;97_7190;98_8873;99_11811&stattab=map
  • Last taxonomy: Flavobacteriaceae
  • 16S sequence: FJ360684
  • Sequence Identity:
  • Total samples: 3831
  • soil counts: 145
  • aquatic counts: 3159
  • animal counts: 393
  • plant counts: 134

Sequence information

16S sequences

  • @ref: 29264
  • description: Meridianimaribacter flavus strain NH57N 16S ribosomal RNA gene, partial sequence
  • accession: FJ360684
  • length: 1470
  • database: nuccore
  • NCBI tax ID: 571115

GC content

  • @ref: 29264
  • GC-content: 32.7

External links

@ref: 29264

culture collection no.: CCTCC AB 208318, LMG 24839, MCCC 1A03544

straininfo link

  • @ref: 91482
  • straininfo: 360311

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19648321Meridianimaribacter flavus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment of the South China Sea.Wang B, Sun F, Du Y, Liu X, Li G, Lai Q, Luo J, Shao ZInt J Syst Evol Microbiol10.1099/ijs.0.009845-02009Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny31976853Mangrovimonas spongiae sp. nov., a novel member of the genus Mangrovimonas isolated from marine sponge.Zhuang L, Lin B, Luo LInt J Syst Evol Microbiol10.1099/ijsem.0.0040062020Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29264Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172568228776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91482Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID360311.1