Archive BacDiveID:10.13145/bacdive133516.20230509.8.1

Strain identifier

BacDive ID: 133516

Type strain:

Species: Flectobacillus roseus

Strain Designation: GFA-11

NCBI tax ID(s): 502259 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 29259

BacDive-ID: 133516

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Flectobacillus roseus GFA-11 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater .

NCBI tax id

NCBI tax id: 502259
Matching level: species

doi: 10.13145/bacdive133516.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Cytophagia
order: Cytophagales
family: Spirosomataceae
genus: Flectobacillus
species: Flectobacillus roseus
full scientific name: Flectobacillus roseus Sheu et al. 2009

@ref: 29259

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cytophagaceae

genus: Flectobacillus

species: Flectobacillus roseus

strain designation: GFA-11

type strain: yes

Morphology

cell morphology

@ref: 29259
gram stain: negative
cell length: 2 µm
cell width: 0.4 µm
cell shape: rod-shaped
motility: no

pigmentation

@ref: 29259
production: yes

Culture and growth conditions

culture temp

@ref	growth	type	temperature	range
29259	positive	growth	10-40
29259	positive	optimum	30	mesophilic

culture pH

@ref	ability	type	pH
29259	positive	growth	7.0-8.0
29259	positive	optimum	7

Physiology and metabolism

oxygen tolerance

@ref: 29259
oxygen tolerance: aerobe

spore formation

@ref: 29259
spore formation: no

halophily

@ref	salt	growth	tested relation	concentration
29259	NaCl	positive	growth	<0.5 %
29259	NaCl	positive	optimum	0.5 %

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
29259	58143	5-dehydro-D-gluconate	+	carbon source
29259	33984	fucose	+	carbon source
29259	28087	glycogen	+	carbon source
29259	18222	xylose	+	carbon source

enzymes

@ref	value	activity	ec
29259	acid phosphatase	+	3.1.3.2
29259	alkaline phosphatase	+	3.1.3.1
29259	alpha-galactosidase	+	3.2.1.22
29259	catalase	+	1.11.1.6
29259	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

isolation

@ref: 29259
sample type: freshwater (river, lake, pond)

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

taxonmaps

@ref: 69479
File name: preview.99_15322.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_200;96_698;97_9437;98_11592;99_15322&stattab=map
Last taxonomy: Flectobacillus
16S sequence: EU420062
Sequence Identity:
Total samples: 8839
soil counts: 713
aquatic counts: 5227
animal counts: 2216
plant counts: 683

Sequence information

16S sequences

@ref: 29259
description: Flectobacillus roseus strain GFA-11 16S ribosomal RNA gene, partial sequence
accession: EU420062
length: 1385
database: nuccore
NCBI tax ID: 502259

GC content

@ref: 29259
GC-content: 39.7

External links

@ref: 29259

culture collection no.: BCRC 17834, LMG 24501

straininfo link

@ref: 91481
straininfo: 339714

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	19622645	Flectobacillus roseus sp. nov., isolated from freshwater in Taiwan.	Sheu SY, Chiu TF, Cho NT, Chou JH, Sheu DS, Arun AB, Young CC, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.009738-0	2009	Cytophagaceae/chemistry/classification/genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Taiwan	Genetics
Phylogeny	20008110	Siphonobacter aquaeclarae gen. nov., sp. nov., a novel member of the family 'Flexibacteraceae', phylum Bacteroidetes.	Tancsics A, Keki Z, Marialigeti K, Schumann P, Toth EM	Int J Syst Evol Microbiol	10.1099/ijs.0.019398-0	2009	Base Composition, Cytophagaceae/classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, Power Plants, RNA, Ribosomal, 16S/genetics	Metabolism
Phylogeny	26297007	Flectobacillus rhizosphaerae sp. nov., isolated from the rhizosphere soil of Oryza sativa (L.), and emended description of the genus Flectobacillus.	Ramaprasad EVV, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.000432	2015	Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/microbiology, Phospholipids/chemistry, Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry	Genetics

Reference

@id	authors	title	doi/url	ID_cross_reference	pubmed
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
29259	Barberan A, Caceres Velazquez H, Jones S, Fierer N.	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	10.1128/mSphere.00237-17	25677	28776041
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
91481	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID339714.1