Strain identifier

BacDive ID: 133512

Type strain: Yes

Species: Flavobacterium algicola

Strain history: CIP <- 2007, NBRC <- T. Nakagawa, Agriculture Tokyo Univ., Abashiri, Hokkaido, Japan: strain TC2

NCBI tax ID(s): 556529 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 29245

BacDive-ID: 133512

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Flavobacterium algicola NBRC 102673 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Algae.

NCBI tax id

  • NCBI tax id: 556529
  • Matching level: species

strain history

  • @ref: 116224
  • history: CIP <- 2007, NBRC <- T. Nakagawa, Agriculture Tokyo Univ., Abashiri, Hokkaido, Japan: strain TC2

doi: 10.13145/bacdive133512.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium algicola
  • full scientific name: Flavobacterium algicola Miyashita et al. 2010

@ref: 29245

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium algicola

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29245negative1.75 µm0.75 µmrod-shapedno
116224negativerod-shapedno

pigmentation

  • @ref: 29245
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34225MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116224CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566
116224CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
29245positivegrowth05-25
29245positiveoptimum20psychrophilic
34225positivegrowth25mesophilic

culture pH

@refabilitytypepH
29245positivegrowth5.5-8
29245positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29245aerobe
116224obligate aerobe

spore formation

  • @ref: 29245
  • spore formation: no

halophily

  • @ref: 29245
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2924517234glucose+carbon source
2924517306maltose+carbon source
2924529864mannitol+carbon source
2924537684mannose+carbon source
29245506227N-acetylglucosamine+carbon source
292454853esculin+hydrolysis
11622417632nitrate+reduction
11622416301nitrite-reduction

metabolite production

  • @ref: 116224
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
29245acid phosphatase+3.1.3.2
29245alkaline phosphatase+3.1.3.1
29245catalase+1.11.1.6
29245cytochrome oxidase+1.9.3.1
116224oxidase+
116224catalase+1.11.1.6
116224urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116224-+++-+----++-----+--

Isolation, sampling and environmental information

isolation

  • @ref: 116224
  • sample type: Algae
  • geographic location: Hokkaido
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • isolation date: 2005

Safety information

risk assessment

  • @ref: 116224
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 29245
  • description: Flavobacterium algicola gene for 16S rRNA, partial sequence
  • accession: AB455265
  • length: 1439
  • database: nuccore
  • NCBI tax ID: 556529

GC content

  • @ref: 29245
  • GC-content: 33.9

External links

@ref: 29245

culture collection no.: NBRC 102673, CIP 109574, TC 2

straininfo link

  • @ref: 91477
  • straininfo: 363755

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19651729Flavobacterium algicola sp. nov., isolated from marine algae.Miyashita M, Fujimura S, Nakagawa Y, Nishizawa M, Tomizuka N, Nakagawa T, Nakagawa JInt J Syst Evol Microbiol10.1099/ijs.0.009365-02009Base Composition, Base Sequence, DNA, Bacterial/chemistry, Eukaryota/*microbiology, Flavobacterium/chemistry/*classification/physiology, Japan, Molecular Sequence Data, Oceans and Seas, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Homology, Nucleic AcidGenetics
Phylogeny24893942Flavobacterium faecale sp. nov., an agarase-producing species isolated from stools of Antarctic penguins.Kim JH, Choi BH, Jo M, Kim SC, Lee PCInt J Syst Evol Microbiol10.1099/ijs.0.059618-02014Animals, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Flavobacterium/*classification/genetics/isolation & purification, Glycoside Hydrolases/*biosynthesis, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spheniscidae/*microbiology, Vitamin K 2/analogs & derivatives/chemistry, Xanthophylls/chemistry, ZeaxanthinsGenetics
Phylogeny29458470Flavobacterium ovatum sp. nov., a marine bacterium isolated from an Antarctic intertidal sandy beach.Ren Q, Yu M, Li Y, Zhang Y, Shi X, Wu Y, Su Y, Wang Y, Wang X, Zhang XHInt J Syst Evol Microbiol10.1099/ijsem.0.0025862018Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Silicon Dioxide, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29245Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172566528776041
34225Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7332
68382Automatically annotated from API zym
91477Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID363755.1
116224Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109574Collection of Institut Pasteur (CIP 109574)