Strain identifier

BacDive ID: 133496

Type strain: Yes

Species: Psychroflexus salinarum

Strain Designation: ISL-14

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 546024 (species)

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General

@ref: 29197

BacDive-ID: 133496

keywords: 16S sequence, Bacteria, anaerobe, Gram-negative, rod-shaped

description: Psychroflexus salinarum ISL-14 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 546024
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive133496.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Psychroflexus
  • species: Psychroflexus salinarum
  • full scientific name: Psychroflexus salinarum Yoon et al. 2009

@ref: 29197

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Psychroflexus

species: Psychroflexus salinarum

strain designation: ISL-14

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29197negative4.4 µm0.3 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 61074
  • incubation period: 2 days

pigmentation

  • @ref: 29197
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29197positivegrowth04-35
61074positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
29197positivegrowth>5.5
29197positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29197anaerobe
61074aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
29197NaClpositivegrowth<18 %
29197NaClpositiveoptimum2 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2919728260galactose+carbon source
2919717716lactose+carbon source
2919717306maltose+carbon source
2919737684mannose+carbon source
2919753424tween 20+carbon source
2919753423tween 40+carbon source
2919753425tween 60+carbon source
291974853esculin+hydrolysis
2919717632nitrate+reduction

enzymes

@refvalueactivityec
29197gelatinase+
29197cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
29197marine sediment
61074Marine solar saltern sediment2006Yellow SeaRepublic of KoreaKORAsia
67771From salten fieldRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_96555.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_423;96_4328;97_5277;98_6680;99_96555&stattab=map
  • Last taxonomy: Psychroflexus salinarum
  • 16S sequence: EU874390
  • Sequence Identity:
  • Total samples: 8
  • aquatic counts: 8

Sequence information

16S sequences

  • @ref: 29197
  • description: Psychroflexus salinarum strain ISL-14 16S ribosomal RNA gene, partial sequence
  • accession: EU874390
  • length: 1446
  • database: nuccore
  • NCBI tax ID: 546024

GC content

  • @ref: 67771
  • GC-content: 38.5

External links

@ref: 29197

culture collection no.: KCTC 22483, CCUG 56752, ISL -14

straininfo link

  • @ref: 91470
  • straininfo: 409208

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19620356Psychroflexus salinarum sp. nov., isolated from a marine solar saltern.Yoon JH, Kang SJ, Jung YT, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.008359-02009Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolismMetabolism
Phylogeny21984670Psychroflexus halocasei sp. nov., isolated from a microbial consortium on a cheese.Seiler H, Bleicher A, Busse HJ, Hufner J, Scherer SInt J Syst Evol Microbiol10.1099/ijs.0.034801-02011Bacterial Typing Techniques, Base Composition, Cheese/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, *Food Microbiology, *Microbial Consortia, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisBiotechnology

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29197Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172562028776041
61074Curators of the CCUGhttps://www.ccug.se/strain?id=56752Culture Collection University of Gothenburg (CCUG) (CCUG 56752)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91470Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID409208.1